Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1385 ATGGAGAATCTTATGATGGTTGATGATGCTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGATAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATTGATGCAGAGGATCTGGAGAGGCGTATGTGGAAAGATAGGATCAAGCTTAAAAGGATTAAGGAAAGAGAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCGAAGCAGACATCTGACCAGGCTCGAAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAATATATGCTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTCGTATATGGCATTATACCTGAGAAGGGGAAACCAGTTAGTGGTGCTTCTGATAACATCCGAGCTTGGTGGAAAGAAAAAGTTAAATTTGACAAGAATGGACCAGCTGCTATAGCCAAGTATGAAGCAGAATGTCTTGCCAAAGGAGAGGCAGATGGAAATGGAAACGGTAACTCCCGGAGCGTTCTTCAAGACCTTCAGGATGCAACACTCGGATCTCTTTTGTCTTCTTTGATGCAACATTGCGATCCCCCTCAGCGGAAGTACCCATTAGAAAAGGGGGTTCCTCCACCCTGGTGGCCCTCTGGGAATGAAGATTGGTGGGTAAAGCTTGGACTATCCCATGGCAATAGTCCTCCTTATAAGAAGCCACACGATTTGAAGAAGATGTGGAAAGTGGGGGTCTTAACAGCTGTAATAAAGCATATGTCACCTGATATTGCAAAGATAAGGAGGCACGTAAGGCAGTCAAAGTGCTTACAAGACAAGATGACTGCAAAGGAGAGTGCAATTTGGTTAGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGGCAACCGAGCAGTGATAATGGAGCTTCTGGAATAACAGAGACACCATTAGGTGGTCGTGGTGAAAAGCAAGCTGCAGTAAGCAGTGAAAGTGACTATGATGTTGACCTTGCTGATGATGGTGTCGGGTCAGTTTCTTCTAAAGAGGACAGAAGACCACGATCCATGGATGTGGAGCCACCCAGTAATCTAGCCAATAATGCTCCTCAACCTGCTGAAGGAAAGGAGCAAGGTGAAAAACAAAGGAGAAAAAGGCATCGTGGGGGCAGGACAAAGCCTGTCGATCAAACACTGGCTCCCTCTCGAAACGAAGAAGAACCATGTGTCGAACCAAGAACTACTCAGCTCGATATTAACCATTCTAATGTACCATTAGATAGATTTGAAATTCCAGGAAACCAACAACAAAAGGATACTGTCACAGCTTTGAGGCCACTCGAGAAGGATTTGGATGTCCAATCAGAAGTACCAGCTCCTCCGTTCAACATGCTCTCCGTGCCATCCTCTGATAATATCAATATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCTGTAATGCAGAATCCTGAGGTGCAACATGAAAGTGCTTACAATATTTATAATCCATCGGTCGATTATAGATCCAATTTTGATATGCAGCATTCTCAATTTGTTAATGAGCCTCAAATGAGATTGGAGGAACGATTACATATTCCGACACAACATAGAAACGATGGGACAGTAGGAGAAGAATTCAACTATGTAAAAGAAACGTTCAACACAGAACAAGATCGGCCTGTTGATGCACAGTTTGGATCACCAATCAACAGTCTATCATTAGATTATGGAGCATTTAACAGTCCGTTCCATCTTGGGATCGACAGTTCAACCTCATTCGATGACTTGTTGGTTGATGACGATTTGATTCAATACTTCGGAGCATAA 1812 43.27 MENLMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIDAEDLERRMWKDRIKLKRIKEREKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGEADGNGNGNSRSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLSHGNSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPLGGRGEKQAAVSSESDYDVDLADDGVGSVSSKEDRRPRSMDVEPPSNLANNAPQPAEGKEQGEKQRRKRHRGGRTKPVDQTLAPSRNEEEPCVEPRTTQLDINHSNVPLDRFEIPGNQQQKDTVTALRPLEKDLDVQSEVPAPPFNMLSVPSSDNINIISTQSMYVDGRPLLYPVMQNPEVQHESAYNIYNPSVDYRSNFDMQHSQFVNEPQMRLEERLHIPTQHRNDGTVGEEFNYVKETFNTEQDRPVDAQFGSPINSLSLDYGAFNSPFHLGIDSSTSFDDLLVDDDLIQYFGA 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27653536 27655347 - CcPI632755_03g013850.1 Cco03g1385 174744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1385 603 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1385 603 MobiDBLite consensus disorder prediction 62 85 - -
Cco03g1385 603 MobiDBLite consensus disorder prediction 333 347 - -
Cco03g1385 603 Pfam Ethylene insensitive 3, DNA-binding domain 40 287 IPR047091 GO:0003700(InterPro)
Cco03g1385 603 FunFam Ethylene insensitive 3-like 1 74 152 - -
Cco03g1385 603 Coils Coil 39 59 - -
Cco03g1385 603 Gene3D - 160 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1385 603 Gene3D - 74 152 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1385 603 MobiDBLite consensus disorder prediction 289 402 - -
Cco03g1385 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 566 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1385 603 FunFam Ethylene insensitive 3-like 1 161 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1385 Cco-Chr3:27653536 Cco08g1004 Cco-Chr8:21877756 4.50E-100 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58959 PF04873 EIN3 7.90E-127 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1385 K14514 - csv:101210347 1083.94