Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1393 ATGGTGAACCCACCACTCCCCCTCCAGCAAATATCCCCAAAAATGGCTGCCACGAACACCAATGTCGCCGGCGACGTCGACGATCGCGTCTTGGCCACCGCTCAGCAGATCGTCAAAAGCTTCAATACTCCTAAAGAGGTCCGTGAGGATATGCTCTTGATTCTCTCTAGTTTTGATAATCGTCTTTCCAGTATTAGTAGTATGATCAATAGTGATGACTCCAAGACTAAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGACACAAATTCCGATGTGTCGAGACGGTCGTTTAATTGGGAGGATTCGCGGGACGAGGCGACTGAATATTTATCGGCGGTGGATGATATACTCCAGTTAATGGAAGAGCTTTCAATTGGGTCTGAATCGACCGACATCGTAGACCGAGCAGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACCGTCCCTCTCGACGCCGAGCGGCTTTACGGCTCGATCCGAAGAGTTCACCTCTCGTTTGCGTCACATTACAGTGAAATTGACGACGAATTCGAGAGTTTCACCGAGGAAAGTTGCAGTTCCGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGGCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTATAGCACTGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGACTCAGCATTGAGGAGGTTCAGAAAAGTGATTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCAGTCAAAATTACCGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGGTAATGAATCCAAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTATTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCTGAGAAGCTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGGGTTTTGCCCAACTTAGAAGCCATGGTTTCTGATGGATTTTTGATCAGTGAAGCACATGGAGTATTGTCGGGACTAGGAGAAGCAGCCACAGGGACATTTTCCGAGTTTGAGAATGCCATTAAAAGCGAAAATTCAAAGAAAGCAATGCAAAACGCCGAGATTCACCCGCTTATTCGATATGTAATGAATTATGTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGACGAGGAAGTGCAAGACTTGCCAAATGAGAGGGATAATGACGATAATCTGCAGTCGGAAAGTACATCACCTTTAGCTCGTAGATTATTAATGCTGTTATCGTCTTTGGAGTCCAATCTTATGGAAAAATCCAAGTTGTATGAGGATGTTGCTATGCAGTTTATATTTCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGTGATAACTGGCTTCGTAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTACGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGTAGGTTTAGAAATCAGTTAGAGAGTGGAAGGAATTCCGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCAGCTGCTGTATTACATCACTTGCGAAGAAAGGGTACTTGA 1998 44.79 MVNPPLPLQQISPKMAATNTNVAGDVDDRVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSSISSMINSDDSKTKNDRLDAAEKVILRWDTNSDVSRRSFNWEDSRDEATEYLSAVDDILQLMEELSIGSESTDIVDRAENAIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLSFASHYSEIDDEFESFTEESCSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGGNESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPNLEAMVSDGFLISEAHGVLSGLGEAATGTFSEFENAIKSENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNERDNDDNLQSESTSPLARRLLMLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLSDLFEGSAAVLHHLRRKGT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27829460 27831457 - CcPI632755_03g013930.1 Cco03g1393 174752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1393 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 68 653 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cco03g1393 665 Pfam Exo70 exocyst complex subunit C-terminal 289 648 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cco03g1393 665 Gene3D Exocyst complex component Exo70 86 657 - -
Cco03g1393 665 FunFam Exocyst subunit Exo70 family protein 97 658 - -
Cco03g1393 665 MobiDBLite consensus disorder prediction 447 467 - -
Cco03g1393 665 SUPERFAMILY Cullin repeat-like 79 651 IPR016159 -
Cco03g1393 665 Pfam Exocyst complex component Exo70 N-terminal 81 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1393 K07195 - - csv:101205970 1129.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0049 Cco-Chr3:441981 Cco03g1393 Cco-Chr3:27829460 8.80E-107 dispersed
Cco03g0373 Cco-Chr3:4055962 Cco03g1393 Cco-Chr3:27829460 3.60E-241 dispersed
Cco03g1393 Cco-Chr3:27829460 Cco07g1527 Cco-Chr7:29318019 5.10E-121 dispersed
Cco03g1393 Cco-Chr3:27829460 Cco02g2189 Cco-Chr2:34543628 2.10E-87 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2453 . 12 653 EXO70 exocyst subunit family AT5G03540 75.7 4.0e-283 970.7
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G03540 71.0 7.5e-266 913.3
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 8.3e-299 1022.7
Cco05g2453 . 14 653 EXO70 exocyst subunit family AT5G52340 74.2 5.6e-271 930.2
Cco04g1257 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cco05g2453 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.0e-165 578.9
Cco03g0049 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cco03g0049 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cco07g1615 . 63 676 EXO70 exocyst subunit family AT5G13150 53.3 1.3e-174 610.1
Cco01g0910 . 109 720 EXO70 exocyst subunit family AT5G13990 54.0 1.5e-187 653.3
Cco07g1527 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cco07g1527 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cco07g1527 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Cco03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 62.1 3.2e-227 785.0
Cco03g0373 . 18 630 EXO70 exocyst subunit family AT5G50380 61.1 4.9e-212 734.6
Cco08g1418 . 13 682 EXO70 exocyst subunit family AT4G31540 73.6 6.7e-294 1006.5
Cco10g2071 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74