Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1420 ATGGAAGACGAAGCCTCCTCCAGCTTCCTTTCCCATATCAAGACTCCTATCCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAGTTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGATCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTAAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGCAAAGCGAATTAGGCTATTTGGAGTGCATATTGATTGA 1077 45.03 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSESSCLAAEKESVKNEQILESELGQGKGCEKEKNKKKKEILSIELNPNDKNVGAKRIRLFGVHID 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28395296 28396372 - CcPI632755_03g014200.1 Cco03g1420 174779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1420 358 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cco03g1420 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 357 IPR044800 GO:0003700(InterPro)
Cco03g1420 358 Gene3D - 164 295 IPR015300 -
Cco03g1420 358 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Cco03g1420 358 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1420 K09287 - - csv:101219913 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1420 Cco-Chr3:28395296 Cco06g1417 Cco-Chr6:24673747 2.50E-82 dispersed
Cco03g1420 Cco-Chr3:28395296 Cco07g0865 Cco-Chr7:20059607 1.20E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g127 . . Bda02g00652 Bda09g01367 Bpe01g00296 . . . . Cmo11g00834 . . . . Sed12g1834 Cpe05g00517 . Bhi02g01605 Tan09g0896 Cmetu02g0836 . . . . Cla02g02293 Cam02g2436 Cec02g2485 Cco02g2518 Clacu02g2411 Cmu02g2344 Cre02g2665 . . . . Lsi06g00470 . Chy05g00088 Cme05g00107 Blo08g00085 Blo14g00266 . . Bpe08g00254 . Bma07g00238 Bma11g00274 Sed01g3335 Cmo02g01256 Cmo20g00061 Cma02g01220 Cma20g00057 Car02g01008 Car20g00045 Cpe16g00903 Cpe04g00940 Bhi10g00367 Tan07g0693 Cmetu05g1669 . Hepe08g0088 . . Cla03g01321 Cam03g1400 Cec03g1432 Cco03g1420 Clacu03g1420 Cmu03g1980 Cre03g1653 . Csa01g03119 Chy02g01405 Cme02g00471
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1857 . 41 156 RAV Transcription Factor Family AT2G36080 75.9 9.7e-48 186.8
Cco06g0234 . 78 193 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cco01g0128 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cco07g0865 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 1.7e-39 159.5
Cco05g2568 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.1e-38 154.8
Cco01g0128 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cco07g0865 . 71 312 RAV Transcription Factor Family AT2G46870 50.8 5.0e-55 211.8
Cco06g0234 . 73 323 RAV Transcription Factor Family AT2G46870 50.8 1.6e-53 206.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cco10g1857 . 36 152 RAV Transcription Factor Family AT2G46870 66.7 3.3e-38 156.0
Cco10g1857 . 34 163 RAV Transcription Factor Family AT3G11580 65.2 6.6e-44 174.5
Cco06g0234 . 80 200 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cco01g0128 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cco07g0865 . 71 179 RAV Transcription Factor Family AT3G11580 63.9 1.9e-38 156.4
Cco01g0128 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cco07g0865 . 70 309 RAV Transcription Factor Family AT3G61970 50.8 1.9e-51 199.9
Cco06g0234 . 81 315 RAV Transcription Factor Family AT3G61970 51.3 4.7e-50 195.3
Cco05g2568 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cco01g0128 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cco07g0865 . 72 179 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cco10g1857 . 41 240 RAV Transcription Factor Family AT5G06250 53.0 2.7e-49 192.6
Cco06g0234 . 83 193 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cco06g1417 . 73 367 RAV Transcription Factor Family AT1G50680 52.5 8.7e-85 310.8
Cco03g1420 . 47 328 RAV Transcription Factor Family AT1G50680 54.2 4.2e-79 292.0
Cco06g1417 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 4.5e-84 308.5
Cco03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cco05g2568 . 1 347 RAV Transcription Factor Family AT1G13260 62.7 3.1e-106 382.1
Cco03g1000 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cco01g0128 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cco10g1857 . 41 153 RAV Transcription Factor Family AT1G13260 68.1 1.8e-37 153.7
Cco06g0234 . 79 193 RAV Transcription Factor Family AT1G13260 66.4 2.4e-37 153.3
Cco05g2568 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 4.2e-100 361.7
Cco03g1000 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cco10g1857 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.1e-36 151.0
Cco05g2568 . 1 348 RAV Transcription Factor Family AT1G68840 61.6 9.6e-111 397.1
Cco03g1000 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cco10g1857 . 41 169 RAV Transcription Factor Family AT1G68840 63.8 7.5e-39 158.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cco06g0234 . 83 200 RAV Transcription Factor Family AT1G68840 63.3 1.8e-37 153.7
Cco05g2568 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 4.2e-100 361.7
Cco03g1000 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cco10g1857 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.1e-36 151.0
Cco06g1417 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 4.5e-84 308.5
Cco03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cco10g1857 . 34 163 RAV Transcription Factor Family AT3G11580 65.2 6.6e-44 174.5
Cco06g0234 . 80 200 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cco01g0128 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cco07g0865 . 71 179 RAV Transcription Factor Family AT3G11580 63.9 1.9e-38 156.4
Cco01g0128 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cco07g0865 . 72 179 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cco10g1857 . 41 156 RAV Transcription Factor Family AT2G36080 75.9 9.7e-48 186.8
Cco06g0234 . 78 193 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cco01g0128 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cco07g0865 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 1.7e-39 159.5
Cco05g2568 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.1e-38 154.8
Cco10g1857 . 41 240 RAV Transcription Factor Family AT5G06250 53.0 2.7e-49 192.6
Cco06g0234 . 83 193 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cco01g0128 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cco07g0865 . 71 312 RAV Transcription Factor Family AT2G46870 50.8 5.0e-55 211.8
Cco06g0234 . 73 323 RAV Transcription Factor Family AT2G46870 50.8 1.6e-53 206.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cco10g1857 . 36 152 RAV Transcription Factor Family AT2G46870 66.7 3.3e-38 156.0
Cco06g1417 . 73 367 RAV Transcription Factor Family AT1G50680 52.5 8.7e-85 310.8
Cco03g1420 . 47 328 RAV Transcription Factor Family AT1G50680 54.2 4.2e-79 292.0
Cco01g0128 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cco07g0865 . 70 309 RAV Transcription Factor Family AT3G61970 50.8 1.9e-51 199.9
Cco06g0234 . 81 315 RAV Transcription Factor Family AT3G61970 51.3 4.7e-50 195.3
Cco05g2568 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cco05g2568 . 1 347 RAV Transcription Factor Family AT1G13260 62.7 3.1e-106 382.1
Cco03g1000 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cco01g0128 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cco10g1857 . 41 153 RAV Transcription Factor Family AT1G13260 68.1 1.8e-37 153.7
Cco06g0234 . 79 193 RAV Transcription Factor Family AT1G13260 66.4 2.4e-37 153.3
Cco05g2568 . 1 348 RAV Transcription Factor Family AT1G68840 61.6 9.6e-111 397.1
Cco03g1000 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cco10g1857 . 41 169 RAV Transcription Factor Family AT1G68840 63.8 7.5e-39 158.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cco06g0234 . 83 200 RAV Transcription Factor Family AT1G68840 63.3 1.8e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58960 PF02362 B3 6.70E-27 CL0405 Cco TF