Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1420 ATGGAAGACGAAGCCTCCTCCAGCTTCCTTTCCCATATCAAGACTCCTATCCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAGTTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGATCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTAAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGCAAAGCGAATTAGGCTATTTGGAGTGCATATTGATTGA 1077 45.03 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSESSCLAAEKESVKNEQILESELGQGKGCEKEKNKKKKEILSIELNPNDKNVGAKRIRLFGVHID 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28395296 28396372 - CcPI632755_03g014200.1 Cco03g1420 174779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1420 358 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cco03g1420 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 357 IPR044800 GO:0003700(InterPro)
Cco03g1420 358 Gene3D - 164 295 IPR015300 -
Cco03g1420 358 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
Cco03g1420 358 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Cco03g1420 358 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1420 358 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1420 Cco-Chr3:28395296 Cco06g1417 Cco-Chr6:24673747 2.50E-82 dispersed
Cco03g1420 Cco-Chr3:28395296 Cco07g0865 Cco-Chr7:20059607 1.20E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58960 PF02362 B3 6.70E-27 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1420 K09287 - csv:101219913 648.662