Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1436 ATGGTGCTTTGGCCGTGGCATGATATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTCATAACGTTTCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTGGAAGTACTGAGTCTTGGTCCGACATTTCTTGTAATGAAGTTGATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTCCATGGCGTCTTTTTGTTTCTCGAATTCTTCGTTTTCTTTGGTTTAGTACTGCATCAGCTTCGATAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAATATCCTCATGCATATACCTGCTTGCTGTCTTTTAACAAATCAATGTGATTGGTGGCCTCTTGTCCGCTTTTTCAAGTGGATGCGTCAGGAACGTTACTATGTTGGACGTGGGATGTATGAGAGGACTACTGACTTTATCAAGCTCTGGATGTTGATGAGAATATTAGCACATTTGATAACCAAAAGGCTCGGTTAG 660 39.7 MVLWPWHDMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVITFQALTIVAFNNGSFNMKTLLEVLSLGPTFLVMKLIESVLDILMMYGAYSTPWRLFVSRILRFLWFSTASASITFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLNILMHIPACCLLTNQCDWWPLVRFFKWMRQERYYVGRGMYERTTDFIKLWMLMRILAHLITKRLG 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28671516 28674184 + CcPI632755_03g014360.1 Cco03g1436 174795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1436 219 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 13 206 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1436 Cco-Chr3:28671516 Cco06g1969 Cco-Chr6:29819166 1.00E-49 dispersed
Cco03g1433 Cco-Chr3:28555120 Cco03g1436 Cco-Chr3:28671516 9.10E-96 proximal
Cco03g1436 Cco-Chr3:28671516 Cco03g1442 Cco-Chr3:28791021 1.60E-95 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1436 K11000 - csv:101216435 365.54