Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1437 ATGCTCATGTTAGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTGAAAACAAGGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATTTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCACAAGACAAGTTGTGGAAGCGTATTTCAAGAGATGACTATATGAAATATGCAGTACAGGAATGTTACCACGCCATTAAGCTTATCTTAACGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGTTATTTGAAGACATTCAAGTTAGTATAGCAAACAATTCGATTCTAAATGACTTCCAGCTAAATAAGCTGCCTCTTGTGATTACAAGAGTAACTACTCTAACGAGTATTCTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGGGGTTGTTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATATCGTTTTCGGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGCTTGTTTACAAAATTAAATTGGCCTAAAGATCCAGAATTGAAGTCACAAGTCAAAAGATTGCATTCCTTGTTAACCATTAAAGATTCAGCTTCAAATATTCCAGTTAATCTTGAGGCCAGAAGGAGACTGCAATTCTTTACGAATTCACTTTTCATGGAGATGCCAACTCCAAAACCTGTTCGTCAGATGCTTTCCTTCAGAAGTTTTGTGTTGTACTTTGGTATTGGGGTTCTGCCACCTTGGTGTTTGGGCTATATTCTGATTCAGGTTGTGTTGTACTTTGATGAGTGGAAGAACTTTCTTGCTCGAATTGGTCGAGATGAGAATGAAGTTGACCTAGAATCATTTGATAACCCTAATGACATCCTTGCACTACGATTTTGGGCCTCTTATCGGGGACAGACTTTAGCAAGAACAGTTCGTGGAATGATGTACTATAGGAAAGCTCTTATGCTGCAGACTTATTTAGAGAGAGGAACTTATGGAGATTTGGAAGCTGCCATTCCTTGTACTGATGCTACTGATACTCGGGGTTTTGATTTATCTCCGGAAGCACATGCATTGGCAGATCTTAAATTTACATATGTTGTGACGTGTCAGATATATGGCAAACAAAGAGAACAACAAAAACCTGAGGCCGCTGACATTGCATTGCTTATGCAAAGAAATGAAGCCCTTCGTGTTGCCTACATTGATGATATTGAAACCCTAAAGGATGGTAAGGTGCACAAAGAATTTTACTCAAAGCTTGTAAAGGCTGATATCGATGGAAAAGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAATCATGCTATTGTTTTTACTCGTGGAAATACTATTCAGACAATTGATATGAATCAGGATAATTACTTTGAAGAAGCATTGAAGATGAGAAATCTGCTTGAGGAATTTGGTCGTGATCATGGTATTCGTTCTCCTACCATACTAGGTGTCAGGGAACATGTATTTACGGGGAGTGTTTCATGTCTTGCTTCATTCATGTCAAATCAAGAAGCTAGTTTTGTGACTTTTTTTCAGCGTGTTCTGGCAAATCCCTTGAAGGTGCGTATGCATTATGGCCATCCAGATGTTTTTGATAGGGTTTTTCATCTAACACGAGGTGGCATCAGCAAGGCCTCCCGTGTTATCAACATTAGTGAAGATGTCTTTGCAGGATTTAATTCAACATTGAGGCAAGGGAACGTTACTCATCATGAGTATATTCAGGTCGGTAAAGGACGAGATGTTGGTCTTAACCAGATTACTCTTTTTGAAAGAAAGCTTGCTGGTGGTAATGGAGAACAAGTTCTTAGCCGTGATGTATATTGGCTTGGCCAACTGTTCGATTTTTTCCGGATGATGTCATTCTATTTCACCACTGTTGGCTACTACTTTTGTACTATGTTAACGGTGCTAACTGTATACATTTTTCTCTATGGAAAAGCATATTTGGCACTATTTGGAGTTGGTGAGACCATTGAAGATAGAGCTAACATTACAGATATTATGGCATTGTCAACTGCTTTGAATGGACAGTTCCTCATCCAAATTGGTATCTGCTCTGCTGTACCGATCCTTGGATTCATATTGGAGCAAGGTTTCTTCAAGACTATTTTCAACTTCATAACGATGCAGCTTCAGCTTTGTTCTATCTTCTTCACATTCTCTCTTTGCACAAAAACTCACTATTTTGGCCGAACAATTCTTCATGGCGGTGCAAAGTATCATGCAACTGGAAGGGGATTTGTGGTTCGCCATATCATATTCTCTGAAAATTACAGATTGTACTCCCGCAGCCATTTTGTTAAAGGTGCTATTGGCACCATCTTTACTTACTGTTCATTCATGTACGGAATCAAAAATAAGATTTAA 2532 38.94 MLMLVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPENKGNLPMVQWPLFLLVSKIFLAKDIAVKRRDSQDKLWKRISRDDYMKYAVQECYHAIKLILTELLVGEGRMWVERLFEDIQVSIANNSILNDFQLNKLPLVITRVTTLTSILKEPETSELEKGVVKAVQDLYDVVHHDIVFGDKRGHYETWNILVKARNEGRLFTKLNWPKDPELKSQVKRLHSLLTIKDSASNIPVNLEARRRLQFFTNSLFMEMPTPKPVRQMLSFRSFVLYFGIGVLPPWCLGYILIQVVLYFDEWKNFLARIGRDENEVDLESFDNPNDILALRFWASYRGQTLARTVRGMMYYRKALMLQTYLERGTYGDLEAAIPCTDATDTRGFDLSPEAHALADLKFTYVVTCQIYGKQREQQKPEAADIALLMQRNEALRVAYIDDIETLKDGKVHKEFYSKLVKADIDGKDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNTIQTIDMNQDNYFEEALKMRNLLEEFGRDHGIRSPTILGVREHVFTGSVSCLASFMSNQEASFVTFFQRVLANPLKVRMHYGHPDVFDRVFHLTRGGISKASRVINISEDVFAGFNSTLRQGNVTHHEYIQVGKGRDVGLNQITLFERKLAGGNGEQVLSRDVYWLGQLFDFFRMMSFYFTTVGYYFCTMLTVLTVYIFLYGKAYLALFGVGETIEDRANITDIMALSTALNGQFLIQIGICSAVPILGFILEQGFFKTIFNFITMQLQLCSIFFTFSLCTKTHYFGRTILHGGAKYHATGRGFVVRHIIFSENYRLYSRSHFVKGAIGTIFTYCSFMYGIKNKI 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28717903 28733564 + CcPI632755_03g014370.1 Cco03g1437 174796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1437 843 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 12 833 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cco03g1437 843 Pfam 1,3-beta-glucan synthase component 325 829 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1437 Cco-Chr3:28717903 Cco06g1969 Cco-Chr6:29819166 0.00E+00 dispersed
Cco03g1433 Cco-Chr3:28555120 Cco03g1437 Cco-Chr3:28717903 0.00E+00 proximal
Cco03g1437 Cco-Chr3:28717903 Cco03g1444 Cco-Chr3:28827245 3.40E-138 proximal
Cco03g1437 Cco-Chr3:28717903 Cco03g1445 Cco-Chr3:28840466 1.30E-113 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1437 K11000 - csv:101216435 1449.49