Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1441 ATGACACGAGGCGAGGAGTTGTGGGAGCGCTTAGTTCAAGCAGCCTTAAGAAGGGATAGAATTGGCATTGATGCTTATGGACCAAACATTACGGAAATTGATGAAATCTTGATAGCTGCAGATGAAATCCAAGATGAAGATCCCAATATCTGGAGAATCTTATGTGAGCATGCATATGCACTTGCGCAAAACCTGGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATCCAAAACTGGTTTGATGTCTGTCATTAAGCAAAAGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCGGTGCAATGGGAAAGGGTACAGGCAGTTTTAGAAAGAGGAGGAACAAGACCTATACTCTCTGTGTGCGGTGTGGCCACCGCAACTTCCATCTCCAGAAGAGTTGCTGTGTAGCCTGTGCTTTCCCTGTTGCTTGCAAGTGA 546 44.14 MTRGEELWERLVQAALRRDRIGIDAYGPNITEIDEILIAADEIQDEDPNIWRILCEHAYALAQNLDPNSEGRGVLQSKTGLMSVIKQKLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFGAMGKGTGSFRKRRNKTYTLCVRCGHRNFHLQKSCCVACAFPVACK 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28775800 28785727 + CcPI632755_03g014410.1 Cco03g1441 174800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1441 181 Gene3D - 137 181 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco03g1441 181 PANTHER 60S RIBOSOMAL PROTEIN L37 138 180 - GO:0003723(PANTHER)|GO:0022625(PANTHER)
Cco03g1441 181 Pfam Ribosomal protein L37e 139 178 IPR001569 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco03g1441 181 SUPERFAMILY Zn-binding ribosomal proteins 138 177 IPR011332 GO:0006412(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1441 Cco-Chr3:28775800 Cco06g1969 Cco-Chr6:29819166 2.00E-35 dispersed
Cco03g1434 Cco-Chr3:28638775 Cco03g1441 Cco-Chr3:28775800 3.10E-39 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1441 K11000 - csv:101216435 209.149