Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1441 ATGACACGAGGCGAGGAGTTGTGGGAGCGCTTAGTTCAAGCAGCCTTAAGAAGGGATAGAATTGGCATTGATGCTTATGGACCAAACATTACGGAAATTGATGAAATCTTGATAGCTGCAGATGAAATCCAAGATGAAGATCCCAATATCTGGAGAATCTTATGTGAGCATGCATATGCACTTGCGCAAAACCTGGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATCCAAAACTGGTTTGATGTCTGTCATTAAGCAAAAGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCGGTGCAATGGGAAAGGGTACAGGCAGTTTTAGAAAGAGGAGGAACAAGACCTATACTCTCTGTGTGCGGTGTGGCCACCGCAACTTCCATCTCCAGAAGAGTTGCTGTGTAGCCTGTGCTTTCCCTGTTGCTTGCAAGTGA 546 44.14 MTRGEELWERLVQAALRRDRIGIDAYGPNITEIDEILIAADEIQDEDPNIWRILCEHAYALAQNLDPNSEGRGVLQSKTGLMSVIKQKLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFGAMGKGTGSFRKRRNKTYTLCVRCGHRNFHLQKSCCVACAFPVACK 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28775800 28785727 + CcPI632755_03g014410.1 Cco03g1441 174800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1441 181 Gene3D - 137 181 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco03g1441 181 PANTHER 60S RIBOSOMAL PROTEIN L37 138 180 - GO:0003723(PANTHER)|GO:0022625(PANTHER)
Cco03g1441 181 Pfam Ribosomal protein L37e 139 178 IPR001569 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco03g1441 181 SUPERFAMILY Zn-binding ribosomal proteins 138 177 IPR011332 GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1441 K11000 - - csv:101216435 209.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1441 Cco-Chr3:28775800 Cco06g1969 Cco-Chr6:29819166 2.00E-35 dispersed
Cco03g1434 Cco-Chr3:28638775 Cco03g1441 Cco-Chr3:28775800 3.10E-39 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1154 . 671 1702 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cco05g1936 . 36 1117 Cell Wall Biosynthesis AT5G17420 65.6 0.0e+00 1431.0
Cco04g0464 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.6
Cco09g0397 . 16 1089 Cell Wall Biosynthesis AT5G17420 66.6 0.0e+00 1426.8
Cco08g0285 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cco04g1331 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.7 0.0e+00 1411.4
Cco06g0146 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.4 0.0e+00 1394.8
Cco03g0696 . 108 1083 Cell Wall Biosynthesis AT5G17420 61.9 0.0e+00 1271.9
Cco03g1433 . 1 1835 Cell Wall Biosynthesis AT3G07160 77.2 0.0e+00 2851.2
Cco06g1969 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.8 0.0e+00 2348.5
Cco03g1437 . 5 823 Cell Wall Biosynthesis AT3G07160 74.2 0.0e+00 1192.9
Cco03g1447 . 1 591 Cell Wall Biosynthesis AT3G07160 77.2 6.0e-268 921.8
Cco03g1442 . 2 532 Cell Wall Biosynthesis AT3G07160 68.0 8.2e-217 751.9
Cco03g1444 . 52 361 Cell Wall Biosynthesis AT3G07160 67.1 2.2e-113 408.3
Cco03g1435 . 2 269 Cell Wall Biosynthesis AT3G07160 71.9 2.9e-113 407.9
Cco03g1439 . 1 255 Cell Wall Biosynthesis AT3G07160 69.0 2.6e-106 384.8
Cco03g1445 . 4 213 Cell Wall Biosynthesis AT3G07160 79.0 5.0e-89 327.4
Cco03g1436 . 11 202 Cell Wall Biosynthesis AT3G07160 67.0 1.8e-67 255.8
Cco03g1441 . 1 135 Cell Wall Biosynthesis AT3G07160 71.6 4.0e-46 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014227 0 0 1 0 0 2 1 2 3 0 2 2 0 0 0 1 2 1 0 1 0 0 0 1 3 0 0 0 0 1 23