Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1442 ATGGTACTGAAGCAACTCAGTGATGCAATTCCTAAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCGTATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGCTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTGAAGTATTTCAGTGGCCTTCCAAAGTTGCCCGCAGAGTTTTCCATTCCGGAGACCAGGAGTCCTGACATGCTTGACTTTCTACAATTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTACGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTCATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAGGTATTGAGGCATCAGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCTGCGGAAGCTGCAAACAACAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCATCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAACTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCAAGGCGTCTTTTTGTTTCTCGAATTGTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTCGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTTCTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCAATTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAAGAGAAAGATTTGAATACTTGGAGCTTGTAAAGAGGCTTCTTTCTTGA 1641 39.73 MVLKQLSDAIPKEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNAIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETRSPDMLDFLQFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHQIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTWLEVLSLGPTFVVMNFIESVLDILMMYGAYSTSRRLFVSRIVLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDSWPLVRFFKWMRQERFYVGSGMYERTTDFIKYMLLWIIILGGKLAIAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKRERFEYLELVKRLLS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28791021 28807565 + CcPI632755_03g014420.1 Cco03g1442 174801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1442 546 SMART FKS1_dom1_2 162 274 IPR026899 -
Cco03g1442 546 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 164 271 IPR026899 -
Cco03g1442 546 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 23 532 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1442 K11000 - - csv:101216435 979.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1435 Cco-Chr3:28649245 Cco03g1442 Cco-Chr3:28791021 4.90E-146 dispersed
Cco03g1442 Cco-Chr3:28791021 Cco06g1969 Cco-Chr6:29819166 1.80E-164 dispersed
Cco03g1436 Cco-Chr3:28671516 Cco03g1442 Cco-Chr3:28791021 1.60E-95 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1154 . 671 1702 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cco05g1936 . 36 1117 Cell Wall Biosynthesis AT5G17420 65.6 0.0e+00 1431.0
Cco04g0464 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.6
Cco09g0397 . 16 1089 Cell Wall Biosynthesis AT5G17420 66.6 0.0e+00 1426.8
Cco08g0285 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cco04g1331 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.7 0.0e+00 1411.4
Cco06g0146 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.4 0.0e+00 1394.8
Cco03g0696 . 108 1083 Cell Wall Biosynthesis AT5G17420 61.9 0.0e+00 1271.9
Cco03g1433 . 1 1835 Cell Wall Biosynthesis AT3G07160 77.2 0.0e+00 2851.2
Cco06g1969 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.8 0.0e+00 2348.5
Cco03g1437 . 5 823 Cell Wall Biosynthesis AT3G07160 74.2 0.0e+00 1192.9
Cco03g1447 . 1 591 Cell Wall Biosynthesis AT3G07160 77.2 6.0e-268 921.8
Cco03g1442 . 2 532 Cell Wall Biosynthesis AT3G07160 68.0 8.2e-217 751.9
Cco03g1444 . 52 361 Cell Wall Biosynthesis AT3G07160 67.1 2.2e-113 408.3
Cco03g1435 . 2 269 Cell Wall Biosynthesis AT3G07160 71.9 2.9e-113 407.9
Cco03g1439 . 1 255 Cell Wall Biosynthesis AT3G07160 69.0 2.6e-106 384.8
Cco03g1445 . 4 213 Cell Wall Biosynthesis AT3G07160 79.0 5.0e-89 327.4
Cco03g1436 . 11 202 Cell Wall Biosynthesis AT3G07160 67.0 1.8e-67 255.8
Cco03g1441 . 1 135 Cell Wall Biosynthesis AT3G07160 71.6 4.0e-46 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117