Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1442 ATGGTACTGAAGCAACTCAGTGATGCAATTCCTAAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCGTATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGCTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTGAAGTATTTCAGTGGCCTTCCAAAGTTGCCCGCAGAGTTTTCCATTCCGGAGACCAGGAGTCCTGACATGCTTGACTTTCTACAATTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTACGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTCATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAGGTATTGAGGCATCAGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCTGCGGAAGCTGCAAACAACAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCATCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAACTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCAAGGCGTCTTTTTGTTTCTCGAATTGTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTCGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTTCTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCAATTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAAGAGAAAGATTTGAATACTTGGAGCTTGTAAAGAGGCTTCTTTCTTGA 1641 39.73 MVLKQLSDAIPKEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNAIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETRSPDMLDFLQFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHQIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTWLEVLSLGPTFVVMNFIESVLDILMMYGAYSTSRRLFVSRIVLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDSWPLVRFFKWMRQERFYVGSGMYERTTDFIKYMLLWIIILGGKLAIAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKRERFEYLELVKRLLS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28791021 28807565 + CcPI632755_03g014420.1 Cco03g1442 174801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1442 546 SMART FKS1_dom1_2 162 274 IPR026899 -
Cco03g1442 546 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 164 271 IPR026899 -
Cco03g1442 546 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 23 532 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1435 Cco-Chr3:28649245 Cco03g1442 Cco-Chr3:28791021 4.90E-146 dispersed
Cco03g1442 Cco-Chr3:28791021 Cco06g1969 Cco-Chr6:29819166 1.80E-164 dispersed
Cco03g1436 Cco-Chr3:28671516 Cco03g1442 Cco-Chr3:28791021 1.60E-95 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1442 K11000 - csv:101216435 979.933