Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1445 | ATGGTCACAATAGTCACTGATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCATTTGATAATCCTAATGACATCCTTGCACTGCGATTTTGGGCCTCTTATCGAGGACAGACGTTAGCAAGAACAGTTCGTGGAATGATGTACTATAGGAAAGCTCTTATGCTGCAGACTTATTTAGAGAGAGGAACTTATGGAGACTTCAAAGCTGCCATTCCTTGTACTGATGCTACTGATACTCGGGGTTTCGATTTATCTCCTGAAGCACGTGCACTAGCAGATCTTAAATTTACATATGTTGTGACATGTCAGATATATGGCAGACAAAGAGAACAACAAAAACCAGAGGCCGCTGACATTGCATTGCTTATGCAAAGAAATGAATCCCTTCGTGTTGCCTACATCGATGATATTGAAACCCTGAAGGATGGTAAGGTGCACAAAGAATTTTACTCAAAACTTGTAAAGGCTGATATCAATGGAAAAGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAACCATGCTATTGTTTTTACTCGTGGAAATGCTATTCAGACAATTGATATGAATCAGAATGGAAAGAATTAG | 651 | 39.63 | MVTIVTDEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTVRGMMYYRKALMLQTYLERGTYGDFKAAIPCTDATDTRGFDLSPEARALADLKFTYVVTCQIYGRQREQQKPEAADIALLMQRNESLRVAYIDDIETLKDGKVHKEFYSKLVKADINGKDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNAIQTIDMNQNGKN | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28840466 | 28846996 | + | CcPI632755_03g014450.1 | Cco03g1445 | 174804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1445 | 216 | Pfam | 1,3-beta-glucan synthase component | 30 | 213 | IPR003440 | GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro) | |
Cco03g1445 | 216 | PANTHER | LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 | 2 | 213 | - | GO:0005886(PANTHER)|GO:0046527(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1445 | Cco-Chr3:28840466 | Cco06g1969 | Cco-Chr6:29819166 | 3.20E-77 | dispersed | |
Cco03g1437 | Cco-Chr3:28717903 | Cco03g1445 | Cco-Chr3:28840466 | 1.30E-113 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1445 | K11000 | - | csv:101216435 | 405.986 |