Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1459 ATGTTCGGGATGGCGGCGGAGGCAGTGACGACCGTGGCGGTCGTGGCAGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGAGTTGGAGGAGGAAAATATACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGGTGATTGGCTTTATTTTGGGTTCGATAAACATATCTACAACGTGTTGGAAGTGAGCAAAACGAGCTACGAGAGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATACTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAGGACTCTCCTCCCATTTCACCACCAAATTTACCCAATATTTCTCCATCTTTACATCCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAATATTTCCATGGCTAATTCCTTCTTCTAA 513 41.91 MFGMAAEAVTTVAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVSKTSYESCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEDSPPISPPNLPNISPSLHPLIWPFSLLLSINISMANSFF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29164564 29165683 - CcPI632755_03g014590.1 Cco03g1459 174818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1459 170 FunFam Lamin-like protein 29 132 - -
Cco03g1459 170 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Cco03g1459 170 Gene3D - 31 134 IPR008972 -
Cco03g1459 170 PANTHER BLUE COPPER PROTEIN 17 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco03g1459 170 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
Cco03g1459 170 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1459 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1459 Cco-Chr3:29164564 Cco10g1540 Cco-Chr10:28628179 2.90E-36 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco02g2423 . 45 263 Phytocyanin Superfamily AT1G08500 56.8 5.7e-64 241.1
Cco03g1459 . 29 140 Phytocyanin Superfamily AT2G27035 58.9 4.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49