Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1460 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTCCAATTGTGGAAGGAGATTCTGGAGCTCCACCAACCGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATTGATATTGTGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAGTATATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCTGAGAAGGGAAAACCTGTAACTGGTGCATCAGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCTGGACGAAATGATGGGTGTAATTCAATTGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCGTACAAGAAGCCTCATGACTTGAAGAAAGCGTGGAAAGTTGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAGTCCAAGTGTTTGCAGGACAAGATGACCGCCAAGGAGAGTGCAACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCCCGGGAGCTTTATCCTGACTCTTGCCCGCCTCTGTCTTCCGGTGGGGGTAGTGGATCGTTGGTCATTAACGATTGCAGTGAATACGATGTAGAAGGCGCCGAGGAGGAACCGAGCTTTGATGTTCAAGATCGAAAACCTGATAACCATGGCTCATTCAACTTGGGAATGGACAGAATGAGAGAACGGGTGCCCCTTCGACAACCACCTTATGCAATCAAAGGAGAGGTTCCTGCAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTTCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGTACATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAACGAGGTTAAACCGGTTATCTTCCCTCTTGCCCCGCCCAAGTCAGCTCCACCGCCGGTCAGCTCAGTTCCATCATCCTTCGACCTGTCTGCTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCTATCTACGACACCAACATCCAAGGCAACAAGAACAACGTAAACACCGGTAATGGTGTCATCACGGAAAACCAAAATCTTTCTCAGTTAAAGGTCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTCTAATGATCGAGGGAAACTTCTTCGAGGGTTCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCATCAGCACAACAATAACAACAACAACAATTTCCACTTAATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGTAGCAGCCATCGATACACTGTCGAAACAGCAGGACATTACATTATGGTATCATTGA 1878 46.38 MMMMFNEMGFCDDMDFLSAPIVEGDSGAPPTDPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHGSFNLGMDRMRERVPLRQPPYAIKGEVPANLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCTYRTSSEFSGSSFHVNEVKPVIFPLAPPKSAPPPVSSVPSSFDLSALGVPEDGQKLISELMSIYDTNIQGNKNNVNTGNGVITENQNLSQLKVQPQQDEYFRNQGLMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHQHNNNNNNNFHLMFGSPFDLSTFDYKEEVPGVAAIDTLSKQQDITLWYH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29193988 29195865 + CcPI632755_03g014600.1 Cco03g1460 174819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1460 625 Coils Coil 48 68 - -
Cco03g1460 625 FunFam Ethylene insensitive 3-like 1 81 159 - -
Cco03g1460 625 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1460 625 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1460 625 MobiDBLite consensus disorder prediction 336 354 - -
Cco03g1460 625 MobiDBLite consensus disorder prediction 334 354 - -
Cco03g1460 625 FunFam Ethylene insensitive 3-like 1 169 306 - -
Cco03g1460 625 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1460 625 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Cco03g1460 625 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 613 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1460 Cco-Chr3:29193988 Cco08g1004 Cco-Chr8:21877756 2.60E-196 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58962 PF04873 EIN3 3.40E-129 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1460 K14514 - csv:101206055 1126.31