Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1460 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTCCAATTGTGGAAGGAGATTCTGGAGCTCCACCAACCGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATTGATATTGTGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAGTATATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCTGAGAAGGGAAAACCTGTAACTGGTGCATCAGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCTGGACGAAATGATGGGTGTAATTCAATTGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCGTACAAGAAGCCTCATGACTTGAAGAAAGCGTGGAAAGTTGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAGTCCAAGTGTTTGCAGGACAAGATGACCGCCAAGGAGAGTGCAACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCCCGGGAGCTTTATCCTGACTCTTGCCCGCCTCTGTCTTCCGGTGGGGGTAGTGGATCGTTGGTCATTAACGATTGCAGTGAATACGATGTAGAAGGCGCCGAGGAGGAACCGAGCTTTGATGTTCAAGATCGAAAACCTGATAACCATGGCTCATTCAACTTGGGAATGGACAGAATGAGAGAACGGGTGCCCCTTCGACAACCACCTTATGCAATCAAAGGAGAGGTTCCTGCAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTTCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGTACATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAACGAGGTTAAACCGGTTATCTTCCCTCTTGCCCCGCCCAAGTCAGCTCCACCGCCGGTCAGCTCAGTTCCATCATCCTTCGACCTGTCTGCTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCTATCTACGACACCAACATCCAAGGCAACAAGAACAACGTAAACACCGGTAATGGTGTCATCACGGAAAACCAAAATCTTTCTCAGTTAAAGGTCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTCTAATGATCGAGGGAAACTTCTTCGAGGGTTCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCATCAGCACAACAATAACAACAACAACAATTTCCACTTAATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGTAGCAGCCATCGATACACTGTCGAAACAGCAGGACATTACATTATGGTATCATTGA 1878 46.38 MMMMFNEMGFCDDMDFLSAPIVEGDSGAPPTDPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHGSFNLGMDRMRERVPLRQPPYAIKGEVPANLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCTYRTSSEFSGSSFHVNEVKPVIFPLAPPKSAPPPVSSVPSSFDLSALGVPEDGQKLISELMSIYDTNIQGNKNNVNTGNGVITENQNLSQLKVQPQQDEYFRNQGLMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHQHNNNNNNNFHLMFGSPFDLSTFDYKEEVPGVAAIDTLSKQQDITLWYH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29193988 29195865 + CcPI632755_03g014600.1 Cco03g1460 174819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1460 625 Coils Coil 48 68 - -
Cco03g1460 625 FunFam Ethylene insensitive 3-like 1 81 159 - -
Cco03g1460 625 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1460 625 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1460 625 MobiDBLite consensus disorder prediction 336 354 - -
Cco03g1460 625 MobiDBLite consensus disorder prediction 334 354 - -
Cco03g1460 625 FunFam Ethylene insensitive 3-like 1 169 306 - -
Cco03g1460 625 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco03g1460 625 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Cco03g1460 625 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 613 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1460 K14514 - - csv:101206055 1126.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1460 Cco-Chr3:29193988 Cco08g1004 Cco-Chr8:21877756 2.60E-196 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g878 . . . . . . . . . Cmo11g00819 . . . . . . Cpe18g00129 . . . . . . . . . . . . . . . . Cone11ag0985 Cone18ag0594 Lsi06g00444 . . . . . . . . . . . . . . Cma11g00814 . . . . Cpe04g00955 . . . . . . . Cla03g01353 Cam03g1432 Cec03g1468 Cco03g1460 Clacu03g1455 Cmu03g2014 Cre03g1685 . . . Cme02g00432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g1460 . 2 624 EIL Transcription Factor Family AT2G27050 58.4 9.1e-191 663.7
Cco08g1004 . 8 495 EIL Transcription Factor Family AT2G27050 62.8 1.4e-167 586.6
Cco03g1385 . 44 326 EIL Transcription Factor Family AT2G27050 62.2 3.8e-96 349.4
Cco03g1385 . 44 578 EIL Transcription Factor Family AT1G73730 55.6 2.0e-147 519.6
Cco03g1460 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.3e-105 378.3
Cco08g1004 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.3e-103 373.2
Cco07g1034 . 24 273 EIL Transcription Factor Family AT1G73730 55.6 1.6e-75 280.8
Cco07g1037 . 24 273 EIL Transcription Factor Family AT1G73730 55.6 1.6e-75 280.8
Cco03g1460 . 3 624 EIL Transcription Factor Family AT3G20770 62.6 3.8e-211 731.5
Cco08g1004 . 7 493 EIL Transcription Factor Family AT3G20770 63.7 2.3e-171 599.4
Cco03g1385 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.5e-98 357.5
Cco03g1385 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.6e-70 263.5
Cco07g1034 . 21 364 EIL Transcription Factor Family AT5G10120 54.6 2.3e-99 359.8
Cco07g1037 . 21 364 EIL Transcription Factor Family AT5G10120 54.6 2.3e-99 359.8
Cco03g1385 . 44 290 EIL Transcription Factor Family AT5G10120 54.8 6.2e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58962 PF04873 EIN3 3.40E-129 No_clan Cco TF