Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g1539 | AAGGGTCTAATTTCTCCGATAAAACCCATTTTCCACTGCTGGAGCTGCTTACAAGTTGCTAGGGTTTATCTTCTTCCTCCTTCTATAATCTTCTATACCGTTGGAGCCGCTTCTCTATCTTTATCTTCAGAACGTGAAATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTCTGGATGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCTTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACTTAGACCATCGCCGTTCTCCTTCTCTGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTACCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCGGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGACGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGAAGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGTGCTTCTCTTTTAGATGCTGTGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGAGGATTGA | 1944 | 43.36 | KGLISPIKPIFHCWSCLQVARVYLLPPSIIFYTVGAASLSLSSEREMAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERLRPSPFSFSAGDIEPLPSLPPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEQRTNKHITDSGPVKKEGVNVYMMKWDSDHGLMIINHYDYSASLLDAVIVISSKMVQDQSQFHED | 647 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30051017 | 30060158 | - | CcPI632755_03g015390.1 | Cco03g1539 | 174898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g1539 | 647 | SUPERFAMILY | GroES-like | 207 | 295 | IPR011032 | - | |
| Cco03g1539 | 647 | Hamap | Co-chaperonin GroES [groES]. | 207 | 301 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | SUPERFAMILY | GroES-like | 108 | 201 | IPR011032 | - | |
| Cco03g1539 | 647 | ProSitePatterns | Chaperonins cpn10 signature. | 110 | 134 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
| Cco03g1539 | 647 | CDD | cpn10 | 109 | 200 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | Gene3D | GroES chaperonin | 103 | 203 | IPR037124 | GO:0006457(InterPro) | |
| Cco03g1539 | 647 | Gene3D | GroES chaperonin | 204 | 296 | IPR037124 | GO:0006457(InterPro) | |
| Cco03g1539 | 647 | FunFam | 20 kDa chaperonin, chloroplastic | 103 | 202 | - | - | |
| Cco03g1539 | 647 | ProSitePatterns | Chaperonins cpn10 signature. | 208 | 232 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
| Cco03g1539 | 647 | PRINTS | 10kDa chaperonin signature | 166 | 178 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | PRINTS | 10kDa chaperonin signature | 110 | 125 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | PRINTS | 10kDa chaperonin signature | 187 | 200 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | PRINTS | 10kDa chaperonin signature | 132 | 153 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | FunFam | 10 kDa chaperonin | 206 | 296 | - | - | |
| Cco03g1539 | 647 | PANTHER | EXPRESSED PROTEIN | 344 | 589 | - | - | |
| Cco03g1539 | 647 | SMART | Cpn10_2 | 109 | 200 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | SMART | Cpn10_2 | 207 | 299 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | Hamap | Co-chaperonin GroES [groES]. | 109 | 201 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | CDD | cpn10 | 208 | 295 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | Pfam | Chaperonin 10 Kd subunit | 208 | 295 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
| Cco03g1539 | 647 | Pfam | Chaperonin 10 Kd subunit | 110 | 199 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g1539 | Cco-Chr3:30051017 | Cco06g0004 | Cco-Chr6:60917 | 3.90E-41 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g1539 | K04078 | - | csv:101212396 | 454.521 |