Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1539 AAGGGTCTAATTTCTCCGATAAAACCCATTTTCCACTGCTGGAGCTGCTTACAAGTTGCTAGGGTTTATCTTCTTCCTCCTTCTATAATCTTCTATACCGTTGGAGCCGCTTCTCTATCTTTATCTTCAGAACGTGAAATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTCTGGATGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCTTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACTTAGACCATCGCCGTTCTCCTTCTCTGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTACCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCGGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGACGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGAAGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGTGCTTCTCTTTTAGATGCTGTGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGAGGATTGA 1944 43.36 KGLISPIKPIFHCWSCLQVARVYLLPPSIIFYTVGAASLSLSSEREMAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERLRPSPFSFSAGDIEPLPSLPPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEQRTNKHITDSGPVKKEGVNVYMMKWDSDHGLMIINHYDYSASLLDAVIVISSKMVQDQSQFHED 647
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 30051017 30060158 - CcPI632755_03g015390.1 Cco03g1539 174898
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1539 647 SUPERFAMILY GroES-like 207 295 IPR011032 -
Cco03g1539 647 Hamap Co-chaperonin GroES [groES]. 207 301 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 SUPERFAMILY GroES-like 108 201 IPR011032 -
Cco03g1539 647 ProSitePatterns Chaperonins cpn10 signature. 110 134 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cco03g1539 647 CDD cpn10 109 200 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 Gene3D GroES chaperonin 103 203 IPR037124 GO:0006457(InterPro)
Cco03g1539 647 Gene3D GroES chaperonin 204 296 IPR037124 GO:0006457(InterPro)
Cco03g1539 647 FunFam 20 kDa chaperonin, chloroplastic 103 202 - -
Cco03g1539 647 ProSitePatterns Chaperonins cpn10 signature. 208 232 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cco03g1539 647 PRINTS 10kDa chaperonin signature 166 178 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 PRINTS 10kDa chaperonin signature 110 125 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 PRINTS 10kDa chaperonin signature 187 200 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 PRINTS 10kDa chaperonin signature 132 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 FunFam 10 kDa chaperonin 206 296 - -
Cco03g1539 647 PANTHER EXPRESSED PROTEIN 344 589 - -
Cco03g1539 647 SMART Cpn10_2 109 200 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 SMART Cpn10_2 207 299 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 Hamap Co-chaperonin GroES [groES]. 109 201 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 CDD cpn10 208 295 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 Pfam Chaperonin 10 Kd subunit 208 295 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cco03g1539 647 Pfam Chaperonin 10 Kd subunit 110 199 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1539 Cco-Chr3:30051017 Cco06g0004 Cco-Chr6:60917 3.90E-41 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1539 K04078 - csv:101212396 454.521