Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1540 ATGACGAAGCCGTCGTCCCCTCACAAATCCTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTGCGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCGTTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAATCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCCGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTTGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCCCTCTGGAATTTCTGA 615 50.89 MTKPSSPHKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDLPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSSTTAPCFDYGDENFDAITTHQDSLWNF 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30072701 30073315 + CcPI632755_03g015400.1 Cco03g1540 174899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1540 204 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677(InterPro)
Cco03g1540 204 MobiDBLite consensus disorder prediction 1 17 - -
Cco03g1540 204 Pfam AP2 domain 20 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Cco03g1540 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 117 IPR051032 -
Cco03g1540 204 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g1540 204 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1540 Cco-Chr3:30072701 Cco08g0689 Cco-Chr8:18254482 4.10E-21 dispersed
Cco05g1818 Cco-Chr5:26968785 Cco03g1540 Cco-Chr3:30072701 4.10E-31 transposed
Cco08g1125 Cco-Chr8:23043709 Cco03g1540 Cco-Chr3:30072701 4.10E-32 transposed
Cco03g1540 Cco-Chr3:30072701 Cco07g1515 Cco-Chr7:29180484 2.00E-15 wgd
Cco03g1540 Cco-Chr3:30072701 Cco09g0133 Cco-Chr9:1165117 6.70E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58965 PF00847 AP2 8.00E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1540 - - - 0.0