Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1546 ATGGCCCTCTCCATTTCTTCCACTGCTCTCTCGACCTTCCCAATCAGAGAAACATTTCACAGAGGACATTTTCCGGGAAAATTCCCAAATTATAAGCTCCGGCGAGATTACTTCGATTTGAAAGCTGCAAAGTCCGGCGTGTCCACCGTCTGTGAACCGCTCCCTCCCGACAGACCGCTCTGGTTCCCCGGCAGCAGCCCGCCGGAGTGGCTCGATGGCAGCCTCCCTGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCTGACCCAGAGCTACTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCAAGATGGGCAATGCTAGCCGTGGCCGGAATCCTACTACCGGAATGGTTCGAAAGCTTAGGATTGATACAAAATTTCTCATGGTACGACGCCGGAGCGCGCGAGTATTTTGCAGACCCGACGACATTGCTGGTGGTGCAATTGGCGTTGATGGGGTGGGTGGAGGGGCGGCGGTGGGCAGACATGGTCAATCCGGGCAGCGTGGATGTTGACCTAAAGCTGCCCCACAAAAAGAAGGCAAAGCCAGACGTGGGCTACCCGGGCGGGTTTTGGTTTGACCCCATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTCATGGTGCTACGGACTAAAGAGATCAAGAATGGGCGGTTGGCCATGTTGGCGTTTGTTGGATTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCGCTTGAGAATCTGGCCGCCCACGTGGCAGATCCTGGCCATTGCAACATCTTTTCGGCGTTTAGCTCGGGCTCGGGTTGA 798 55.89 MALSISSTALSTFPIRETFHRGHFPGKFPNYKLRRDYFDLKAAKSGVSTVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGAREYFADPTTLLVVQLALMGWVEGRRWADMVNPGSVDVDLKLPHKKKAKPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30139622 30142689 + CcPI632755_03g015460.1 Cco03g1546 174905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1546 265 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Cco03g1546 265 SUPERFAMILY Chlorophyll a-b binding protein 57 260 - -
Cco03g1546 265 FunFam Chlorophyll a-b binding protein, chloroplastic 68 253 - -
Cco03g1546 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 257 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cco03g1546 265 Gene3D Chlorophyll a/b binding protein domain 68 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1546 Cco-Chr3:30139622 Cco11g1413 Cco-Chr11:26888750 3.30E-87 dispersed
Cco03g1546 Cco-Chr3:30139622 Cco06g1814 Cco-Chr6:28499730 3.10E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1546 K08908 - csv:101211430 530.791