Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1550 ATGATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTCCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACACCCAACGATGCAGCTTCGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCTGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCTTGATCAACAAAAATCATTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTGATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACACGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCCGCCGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACAGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCGGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAGGCGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG 1152 46.7 MMALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYILDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKAAGSESFNIKEFVQKTEGTHA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30167265 30170489 + CcPI632755_03g015500.1 Cco03g1550 174909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1550 383 Gene3D - 16 172 IPR027363 -
Cco03g1550 383 Pfam Initiation factor 2 subunit family 60 361 IPR000649 GO:0044237(InterPro)
Cco03g1550 383 SUPERFAMILY NagB/RpiA/CoA transferase-like 17 364 IPR037171 -
Cco03g1550 383 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 16 376 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Cco03g1550 383 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 18 371 IPR005251 -
Cco03g1550 383 FunFam Methylthioribose-1-phosphate isomerase 174 372 - -
Cco03g1550 383 FunFam Methylthioribose-1-phosphate isomerase 16 208 - -
Cco03g1550 383 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 19 362 IPR005251 -
Cco03g1550 383 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 45 362 IPR011559 GO:0044249(InterPro)
Cco03g1550 383 Gene3D - 173 378 IPR042529 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1550 Cco-Chr3:30167265 Cco09g0683 Cco-Chr9:6088975 1.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1550 K08963 - csv:101210526 680.633