Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1550 | ATGATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTCCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACACCCAACGATGCAGCTTCGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCTGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCTTGATCAACAAAAATCATTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTGATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACACGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCCGCCGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACAGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCGGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAGGCGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG | 1152 | 46.7 | MMALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYILDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKAAGSESFNIKEFVQKTEGTHA | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30167265 | 30170489 | + | CcPI632755_03g015500.1 | Cco03g1550 | 174909 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1550 | 383 | Gene3D | - | 16 | 172 | IPR027363 | - | |
Cco03g1550 | 383 | Pfam | Initiation factor 2 subunit family | 60 | 361 | IPR000649 | GO:0044237(InterPro) | |
Cco03g1550 | 383 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 17 | 364 | IPR037171 | - | |
Cco03g1550 | 383 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 16 | 376 | - | GO:0019509(PANTHER)|GO:0046523(PANTHER) | |
Cco03g1550 | 383 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 18 | 371 | IPR005251 | - | |
Cco03g1550 | 383 | FunFam | Methylthioribose-1-phosphate isomerase | 174 | 372 | - | - | |
Cco03g1550 | 383 | FunFam | Methylthioribose-1-phosphate isomerase | 16 | 208 | - | - | |
Cco03g1550 | 383 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 19 | 362 | IPR005251 | - | |
Cco03g1550 | 383 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 45 | 362 | IPR011559 | GO:0044249(InterPro) | |
Cco03g1550 | 383 | Gene3D | - | 173 | 378 | IPR042529 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1550 | Cco-Chr3:30167265 | Cco09g0683 | Cco-Chr9:6088975 | 1.80E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1550 | K08963 | - | csv:101210526 | 680.633 |