Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1571 ATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCCGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGCTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCGGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCATCGTTACTCTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAACCCAGATTACAGAAGTAGGTACATTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTAAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCGATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGAAGCAACAAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTTGATGATAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCAACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 984 42.68 MFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRNPDYRSRYIYGLKEEVDEHVFFSQEPSKATGRADYSASSIANSLQLTPLTMSCSSLYPKQSDSSSLQSDQSCYQLHQSLKDPLKQQKRDESQKTVHRFFDEWPPKERGSWLDFDDKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30341709 30342852 + CcPI632755_03g015710.1 Cco03g1571 174930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1571 327 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Cco03g1571 327 Pfam QLQ 3 36 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco03g1571 327 ProSiteProfiles QLQ domain profile. 3 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco03g1571 327 SMART QLQ_2 2 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco03g1571 327 Pfam WRC 72 113 IPR014977 -
Cco03g1571 327 MobiDBLite consensus disorder prediction 284 307 - -
Cco03g1571 327 PANTHER GROWTH-REGULATING FACTOR 5 3 314 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1571 Cco-Chr3:30341709 Cco08g1850 Cco-Chr8:29511862 3.30E-33 dispersed
Cco02g0823 Cco-Chr2:9446174 Cco03g1571 Cco-Chr3:30341709 6.60E-49 transposed
Cco11g0170 Cco-Chr11:1722325 Cco03g1571 Cco-Chr3:30341709 1.70E-78 wgd
Cco03g1571 Cco-Chr3:30341709 Cco07g1484 Cco-Chr7:28990710 2.80E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58968 PF08879 WRC 1.10E-20 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1571 - - - 0.0