Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1581 ATGGCCAACTCTGAATTTCTCTGCTCCTCAGCTCTCTCTGAAACCGATTTTGTTCCTCAATCAAAATCCTTTTCCTCTGTTTTGGCCTCCGACCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTATCGCATGTTGTCGGAGTTTCAAGAGGCTCAAACTGTTGATATCGAAGGCACCACCCTCACCGTCGCTCAGGTGACCGCCGTTGCTCGTCAAAGCAATGTCAAAGTTGTCCTGAATGAAGCTGTGGCACATGATCGTGTGGCCAACAGTGCAAAATGGATTGCTGAGAAAATCTCCAAGGGAATTGATATATATGGAGTTACCACTGGCTTTGGTGCCACCTCCCACCGGCGTACGACCAAACTGGCCGATCTCCAAACAGAACTCATTAGATTCCTCAATGCCGGAGTCATCGGAAAAGACAATCTTCCATCTAGCTACTCAAAGGCGGCCATGCTTGTCAGAACAAACACATTGATGCAAGGCTACTCAGGCATTCGTTGGAAAATTCTCGAGGCTGTGGTGAAGCTCATGAATGAGAACTTGATCCCTAAATTGCCTTTGAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCACTGTCTTATATTGCTGGTGTTATCACTGGAAGGCATAATTCCAAGGTTACCACCATTGAAGGCGATGAGATTACTGCCATAGAAGCTCTCAAGCGAGCTGGAATTGAAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTCTTGTCAATGGAACCGCTGTTGGGTCGGCCGTTGCTGCCACAGTTTGCTATGACGCCAACATTTTGGCTCTTTTAGCTGTCGTCCTCTCTGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCAGAATTTGCAGACCCATTGACCCATAAGCTCAAGCACCACCCTGGCCAGATTGAATCCGCCGCAGCCATGGAGTTTCTCTTGGACCAAAGCGACTTTATGAAAGAAGCAAAAAGCCGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGTTATGCACTTCGAACATCTCCACAGTGGCTCGGACCCCAAATCGAAGTCATTCGAATGGCAACCCATTCGATTGAAAGGGAAATCAACTCTGTGAATGATAACCCATTAATCGACATCGATCGAGATCTAGCTCTACACGGAGGAAACTTTCAAGGAACCTCAATTGGAGTCTCCATGGATAATCTCCGAATCGCCATTGCTGCAATTGGAAAGCTAATGTTTGCCCAATTCTCTGAACTCGTCTGTGATCATTACAACAATGGATTACCATCTAATTTGAGCGGCGGGCCAAACCCTAGCTTGGACTACGGCTTCAAAGGAGCGGAAATCGCCATGGCTGCTTATTGTTCTGAGCTTCAATACTTAGCAAACCCTGTCACAACCCATGTCCAAAGTGCAGAACAACATAATCAAGATGTAAACTCTCTAGGTCTAATCTCAGCCAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTCATGTCAGCTACATACATGGTGGCGCTTTGCCAGGCAATCGATTTAAGACAATACGAAGAAAATATGAGGGAAGTAGTGAAAAATGCTCTTCTACAAACCATTAAGAAAACCTTATACGTTGCAGAGTATGGATCTCTTCTCGAATCGCGATTCTGCGAGAAAGACCTATTACAAGTAATCGAGCGCGAGGCGGTCTTCTCCTACATCGACGATCCAACCAACACATCCTACACTCTAATCCCAAAATTACTGGAAGTTTTAGTCGAAAAAGCACTGAAAGGAGTTACAACAGGCAAAAGCGAGAATGAAAACGAAACAGGGATTGCCATTTTCAAGCAAATCCCAGGGTTTCTAGAGGAATTAAAAGCGAAATTGGAGAAAGATGTCGAAAATGCGAGAGAGAGATTCGAGAATGGTGATTTCGAAGTGGAAAATAGAATCAAGAAATGCAGCACTTACCCGATCTACCGATTCGTGAGGTGTGAAGTGGGGACTCAACTGTTGAGTGGGGCGAAGAAAGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTGATGAAGGGAAGCTTGGAAATGCTGTGATTCAGTGTTTGAAGAATTAG 2136 45.69 MANSEFLCSSALSETDFVPQSKSFSSVLASDHWVKAANALSHTHFEEVYRMLSEFQEAQTVDIEGTTLTVAQVTAVARQSNVKVVLNEAVAHDRVANSAKWIAEKISKGIDIYGVTTGFGATSHRRTTKLADLQTELIRFLNAGVIGKDNLPSSYSKAAMLVRTNTLMQGYSGIRWKILEAVVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTIEGDEITAIEALKRAGIEGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLDQSDFMKEAKSRNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDIDRDLALHGGNFQGTSIGVSMDNLRIAIAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTIKKTLYVAEYGSLLESRFCEKDLLQVIEREAVFSYIDDPTNTSYTLIPKLLEVLVEKALKGVTTGKSENENETGIAIFKQIPGFLEELKAKLEKDVENARERFENGDFEVENRIKKCSTYPIYRFVRCEVGTQLLSGAKKVSPGEDIEKVVEAIDEGKLGNAVIQCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30435586 30437721 + CcPI632755_03g015810.1 Cco03g1581 174940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1581 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cco03g1581 711 Gene3D - 23 261 IPR024083 -
Cco03g1581 711 CDD PAL-HAL 66 525 IPR001106 -
Cco03g1581 711 PANTHER HISTIDINE AMMONIA-LYASE 29 711 IPR001106 GO:0016841(PANTHER)
Cco03g1581 711 Pfam Aromatic amino acid lyase 68 534 IPR001106 -
Cco03g1581 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824(InterPro)
Cco03g1581 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Cco03g1581 711 Gene3D - 528 654 IPR023144 -
Cco03g1581 711 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1581 Cco-Chr3:30435586 Cco04g1114 Cco-Chr4:26572138 1.60E-237 dispersed
Cco03g1581 Cco-Chr3:30435586 Cco04g1110 Cco-Chr4:26545980 2.10E-234 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1581 K10775 - csv:101205510 1250.73