Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g1583 | ATGAGTGGACCAGTTAACATCATTGTAGGTTCTCATGTCTGGATTGAAGATCCAAAACTAGCTTGGATCGACGGTGAAGTTTTCCGCATCAATGGCGAGGAAGTTCATGTCAGGGCTACCAATGGGAAAACAGTTGTTACCAATATATCAAAAATATTCCCCAAGGATACTGAAGCACCTGCTGCAGGTGTAGATGACATGACAAAGCTGTCATACTTGCATGAACCTGGGGTTCTGAGCAACTTGGCAACCAGATATGAACTCAATGAAATTTATACATACACTGGAAATATACTTATTGCAATAAATCCATTCCAAAGATTACCTCATCTTTATGATACTCACATGATGGAACAATACAAAGGAGCTGGATTTGGAGAACTAAGTCCTCATGTCTTTGCAGTTGCTGAAGTGGCATATAGGGCAATGATTAATGAAGGAAAAAGCAATTCAATTCTAGTTAGTGGAGAAAGTGGTGCTGGTAAGACTGAGACCACAAAGATGCTCATGCGGTATCTTGCATACCTTGGAGGTCGATCTGGAGTGGAAGGGCGAACTGTTGAACAACAAGTCCTAGAATCCAATCCTGTTCTTGAAGCATTTGGAAATGCAAAAACTGTCAGGAACAACAATTCAAGTCGCTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGGAGAATATCTGGGGCAGCTGTTCGAACTTATTTGCTTGAAAGGTCTCGAGTATGTCAGATCTCAAATCCTGAAAGAAATTATCATTGCTTTTACCTTCTCTGCGCAGCTCCTCCTGAGGAAAGAGAGAAGTATAAATTAGCAGACCCTAAGTCGTTCCACTACTTAAATCAATCTAGCTGCTTTGAGTTGGATGGAGTGAACGATGCCCATGAATATCTTGCAACCAGAAGGGCTATGGATGTAGTTGGAATCAGCGAGGAGGAGCAGGAGGCAATTTTTAGGGTTGTAGCTGCAATTTTGCATCTTGGAAATATTGAATTTGCCAAGGGAGAGGAGATTGATTCTTCAGTCATTAAGGATGAAAAATCCAGATTCCATCTTAATACCACAGCCGAACTGCTTAAGTGTGATGCAAAGAGTTTGGAGGATGCACTGATTCAACGTGTTATGGTAACACCCGAAGAGGTTATCACTCGAACTCTTGATCCTGTGGCTGCTTTGGGTAGCAGGGATGCCTTGGCTAAAACGATCTATTCGCGACTCTTTGACTGGCTTGTGGAGAAGATTAACAATTCAATTGGGCAAGACCCGAATTCTAAATCATTGATTGGAGTTCTGGATATTTATGGATTTGAGAGTTTTAAATTCAACAGTTTTGAACAGTTCTGCATCAATTTTACAAATGAAAAACTGCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAGGAGGAATATACCAAAGAGCAAATCAATTGGAGTTATATTGAGTTTGTTGATAACCAGGATGTCTTGGATCTGATTGAAAAGAAACCAGGAGGAATTATCGCACTTCTGGATGAGGCCTGCATGTTTCCTAAATCTACACACGAAACATTTGCTCAGAAGTTATACCAGACTTTCAAGAACAACAAACGCTTCATTAAGCCTAAGCTATCTCGTACTAGTTTTACAATATCTCATTATGCTGGAGAGGTGACTTATTTGGCAGATCTATTCTTGGATAAAAACAAAGATTACGTGGTAGCAGAACATCAGGCCCTCTTGACAGCTTCAAAATGCCCCTTTGCGAGGGCTTTATTTCCTCCTCAACCAGAGGAAACAGCGAAATCCTCAAAATTTTCTTCCATTGGTTCACGTTTTAAATTACAACTTCAATCTTTAATGGAGACCTTAAATTCAACAGAGCCTCACTACATCAGATGTGTGAAGCCAAATAATGCGCTCAAGCCTGCTATTTTTGAGAACTCAAATGTTATCCAACAATTACGTTGTGGTGGTGTCCTTGAAGCAATTAGGATCAGCTGTGCTGGATATCCTACCAGAAGAACATTTTATGAGTTCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTTTGGACGGAAACTATGATGACAAGGTAGCATGCCAGATGATCCTGGATAAAATGGGTTTGAAAGGATACCAGATTGGTAAGACAAAAATCTTCCTGAGGGCTGGGCAGATGGCTTCTCTGGACGCAAAGAGAACAGAGGTGCTTAGCAACGCTGCCAGAACTATTCAAATGCAAATTAGAACATTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACATGTGCAATCATTTACTCGAGGTGTTTTGGCTCGAAAACTATTTGAGCAGTTGCGATGGGAAGCAGCAGCTTTAAAGATCCAGAAGTGTTTCAAGCGATATATTGCCAGGAAATCATACTTAGGTTTGCTCTCATCTGCAATCACATTGCAAACAGGGTTAAGGGCAATGAAGGCTCGCGATGAATTCAGATTCAGAAAGCGTACTAAGGCAGCAATTATCATTCAGGCACGTTTGCGTTGTCACCTGGCGTATTCTTACTATAAGAGACTCCAAAAGGCTGCACTATACACGCAGTGTGGTTGGAGGCGACGAGTTGCACGAAAGGAGCTAAGAAGTCTGAAAATGGCTGCAAGGGAAACTGGAGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAACTTACATGGCGCTTGCAACTTGAGAAGCGGCTGAGGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTACAAGATGCTTTACACAGCATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCGAGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTCGTGGAGGATACCGAAAAAATCAATTCCTTAATGGCTGAGGTGGAGAGTTTAAAGGCTTCACTGCTGTCAGAAAAAACGTCAGCTGAAGAAGCTAGAAGAGCTTGTACAGATGCTGAAGCCAAAAATGTGGAGCTGACTAAAAGACTTCAAGATGCAGAGCAGAAGGTGGATCAGCTTCAGGAGTCAGTGCAGAGGCTTGAAGAGAAGCTTTCAAATTCAGAATCAGAGAACCAGGTACTTCGTCAACAAGCATTGACTATGTCGCCGACAGGAAAAGCTTTGTCTGCTAGACCAAAGTCAATGATTATTCAGAGGACACCAGAGAATGGAAATATTCCACATGGAGAGGCCAAAGTATCATCTGATACAACTCTTGCATTATCAAATGTACGTGAGCCTGAATCAGAGGAAAAACCACAGAAATCACTTAATGAGAAACAGCAGGAGAACCAGGATCTGCTAGTGAAGTGCATATCTCAAGATTTAGGATTTTCCGGAGGCAAACCAATTGCTGCTTGTGTCATATATAAATGTCTTCTTCACTGGAGGTCGTTTGAAGTTGAAAGAACCAGCATATTCGATCGAATCATTCAAACAATAGCTTCATCCATAGAGGTCCCGGATAACAATGATGTATTAACTTATTGGTTATCTAATACATCCACATTGTTGTTGCTTCTTCAACACACTCTCAAAGCTAGTGGAGCTGCTAGCTTGACTCCTCAAAGGAGGAGAACTACTTCAGCTTCTCTTTTTGGAAGGATGTCTCAAGGATTAAGGGCTTCTCCACAAAGTGCTGGACTATCATTTCTTAATGGTCGGGGGCTTGGTAGATTGGATGATTTTCGACAGGTTGAGGCAAAGTATCCAGCACTATTGTTTAAGCAGCAGCTTACAGCGTTTTTGGAGAAAATATATGGAATGATAAGAGACAACCTAAAGAAAGAGATTTCGCCTTTACTTGGACTATGTATTCAGGCCCCTAGGACATCACGGGCGAGCTTAGTGAAAGGACGCTCCCAAGCAAACGCTATGGCTCAGCAAGCCTTAATTGCACATTGGCAAAGCATTGTGAAAAGCTTAGACAATTATTTGAAGATCATGAAAGCAAACTATGTACCTCCATTCTTGGTCCGCAAAGTTTTCACTCAGATATTCTCATTTATTAATGTCCAACTATTTAACAGCCTTCTTTTGCGGCGGGAGTGTTGTTCATTCAGCAACGGAGAGTATGTGAAAGCTGGCTTGTCTGAATTAGAACAGTGGTGTTCTGGAGCAACTGAGGAATATGCAGGTTCTGCCTGGGATGAATTAAAGCACATTAGGCAGGCTGTTGGATTCCTTGTTATACATCAAAAACCCAAAAAGACGTTGAATGAGATAACAAAAGACCTATGTCCTGTGCTTAGCATACAACAGTTATATAGGATCAGTACAATGTACTGGGATGACAAATATGGCACACATAGCGTATCTTCAGAAGTTATTTCGAGCATGCGAATTCTGATGACTGAAGACTCCAACAATGCCATCAGCTCATTCCTGTTAGATGATGACTCTAGTATTCCATTTTCTGTGGATGATATTTCCAAATCAATGAAACAAGTAGATGTAACAGACATAGATCCTCCAACGCTGATACGAGAAAACTCCGGGTTCGGATTTTTGCTTCAACGTGCAGAGTAA | 4590 | 41.31 | MSGPVNIIVGSHVWIEDPKLAWIDGEVFRINGEEVHVRATNGKTVVTNISKIFPKDTEAPAAGVDDMTKLSYLHEPGVLSNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAGFGELSPHVFAVAEVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAVRTYLLERSRVCQISNPERNYHCFYLLCAAPPEEREKYKLADPKSFHYLNQSSCFELDGVNDAHEYLATRRAMDVVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLNTTAELLKCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADLFLDKNKDYVVAEHQALLTASKCPFARALFPPQPEETAKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNALKPAIFENSNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFTRGVLARKLFEQLRWEAAALKIQKCFKRYIARKSYLGLLSSAITLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHLAYSYYKRLQKAALYTQCGWRRRVARKELRSLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDALHSMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKASLLSEKTSAEEARRACTDAEAKNVELTKRLQDAEQKVDQLQESVQRLEEKLSNSESENQVLRQQALTMSPTGKALSARPKSMIIQRTPENGNIPHGEAKVSSDTTLALSNVREPESEEKPQKSLNEKQQENQDLLVKCISQDLGFSGGKPIAACVIYKCLLHWRSFEVERTSIFDRIIQTIASSIEVPDNNDVLTYWLSNTSTLLLLLQHTLKASGAASLTPQRRRTTSASLFGRMSQGLRASPQSAGLSFLNGRGLGRLDDFRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGRSQANAMAQQALIAHWQSIVKSLDNYLKIMKANYVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEQWCSGATEEYAGSAWDELKHIRQAVGFLVIHQKPKKTLNEITKDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRILMTEDSNNAISSFLLDDDSSIPFSVDDISKSMKQVDVTDIDPPTLIRENSGFGFLLQRAE | 1529 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30448169 | 30462222 | - | CcPI632755_03g015830.1 | Cco03g1583 | 174942 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g1583 | 1529 | Pfam | Myosin head (motor domain) | 64 | 720 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | ProSiteProfiles | IQ motif profile. | 831 | 857 | - | - | |
| Cco03g1583 | 1529 | ProSiteProfiles | IQ motif profile. | 784 | 812 | - | - | |
| Cco03g1583 | 1529 | SMART | MYSc_2a | 56 | 733 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 33 | 786 | IPR027417 | - | |
| Cco03g1583 | 1529 | Pfam | Myosin N-terminal SH3-like domain | 9 | 51 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | ProSiteProfiles | IQ motif profile. | 735 | 761 | - | - | |
| Cco03g1583 | 1529 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 785 | 883 | IPR027417 | - | |
| Cco03g1583 | 1529 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | ProSiteProfiles | Dilute domain profile. | 1162 | 1473 | IPR002710 | - | |
| Cco03g1583 | 1529 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
| Cco03g1583 | 1529 | FunFam | unconventional myosin-Va | 737 | 785 | - | - | |
| Cco03g1583 | 1529 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| Cco03g1583 | 1529 | FunFam | Myosin XI D | 667 | 730 | - | - | |
| Cco03g1583 | 1529 | ProSiteProfiles | IQ motif profile. | 758 | 787 | - | - | |
| Cco03g1583 | 1529 | Coils | Coil | 877 | 957 | - | - | |
| Cco03g1583 | 1529 | Pfam | IQ calmodulin-binding motif | 785 | 803 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | Pfam | IQ calmodulin-binding motif | 737 | 755 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | Pfam | IQ calmodulin-binding motif | 759 | 778 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | Pfam | IQ calmodulin-binding motif | 832 | 852 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | Gene3D | - | 667 | 730 | - | - | |
| Cco03g1583 | 1529 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
| Cco03g1583 | 1529 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | SMART | iq_5 | 830 | 852 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | SMART | iq_5 | 853 | 875 | IPR000048 | GO:0005515(InterPro) | |
| Cco03g1583 | 1529 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| Cco03g1583 | 1529 | Coils | Coil | 996 | 1051 | - | - | |
| Cco03g1583 | 1529 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | Gene3D | - | 439 | 623 | - | - | |
| Cco03g1583 | 1529 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco03g1583 | 1529 | Gene3D | - | 252 | 310 | - | - | |
| Cco03g1583 | 1529 | ProSiteProfiles | IQ motif profile. | 806 | 835 | - | - | |
| Cco03g1583 | 1529 | Gene3D | - | 833 | 882 | - | - | |
| Cco03g1583 | 1529 | Gene3D | - | 733 | 784 | - | - | |
| Cco03g1583 | 1529 | Gene3D | - | 785 | 832 | - | - | |
| Cco03g1583 | 1529 | FunFam | unconventional myosin-Va | 834 | 881 | - | - | |
| Cco03g1583 | 1529 | FunFam | Myosin 2 | 312 | 426 | - | - | |
| Cco03g1583 | 1529 | SMART | DIL_2 | 1348 | 1455 | IPR002710 | - | |
| Cco03g1583 | 1529 | FunFam | unconventional myosin-Va | 786 | 833 | - | - | |
| Cco03g1583 | 1529 | Pfam | DIL domain | 1348 | 1452 | IPR002710 | - | |
| Cco03g1583 | 1529 | FunFam | Class V myosin | 439 | 580 | - | - | |
| Cco03g1583 | 1529 | PANTHER | MYOSIN | 12 | 1471 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cco03g1583 | 1529 | CDD | MyosinXI_CBD | 1113 | 1495 | IPR037975 | GO:0007015(InterPro) | |
| Cco03g1583 | 1529 | ProSiteProfiles | IQ motif profile. | 854 | 883 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g1815 | Cco-Chr2:31011488 | Cco03g1583 | Cco-Chr3:30448169 | 0.00E+00 | dispersed | |
| Cco03g1583 | Cco-Chr3:30448169 | Cco05g0432 | Cco-Chr5:3531561 | 0.00E+00 | dispersed | |
| Cco03g1583 | Cco-Chr3:30448169 | Cco06g0132 | Cco-Chr6:1302224 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g1583 | K10357 | - | csv:101204300 | 2908.24 |