Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1588 ATGGTCAAATTTGGTGATTCAAAAGATGATTTTGTAAGAAAATTCAAAGAAAAAGAAAAGTCAAAGATTCAAAAGAAGGAAAGAGGGAAGAAACGTATACGATCCCGCATCTTCCAATCCAATCCGACCAAACACAGCCGTATTTTTATTAAATCAGCTAATCATCCAAAAAGCTTCAATTCGAGCATCAATTCTACACGGTTGCAGCCTGGAAGAGATCCGCCATCAATGAGGAAGGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAGTCTTCCTCAAGAAGAACAATCCATAGCGACGTTTTTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGTATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCAATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCCGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTGGGAGAGAGGTATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACTGGAAAATTTCCTTATTCTCCACCAGAACAAGATGGAGGATGGGTGAACTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCGGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGATCTCCACTTGCAACTTTCTAAATTTTATCTGTCGATCGTCTCTGGCTCGTACACGGGAATCTCAATTGTTTGCTGCTTGCAAGGATGGAGAAGGAATCCACCGCAATCTCACTTTCTCATGA 1350 41.11 MVKFGDSKDDFVRKFKEKEKSKIQKKERGKKRIRSRIFQSNPTKHSRIFIKSANHPKSFNSSINSTRLQPGRDPPSMRKGGFSNNLNLKLSLPQEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQTDPKDRLSARELLEHPFIKMISTCNFLNFICRSSLARTRESQLFAACKDGEGIHRNLTFS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30499278 30503867 + CcPI632755_03g015880.1 Cco03g1588 174947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1588 449 Gene3D Transferase(Phosphotransferase) domain 1 227 431 - -
Cco03g1588 449 MobiDBLite consensus disorder prediction 55 71 - -
Cco03g1588 449 Pfam Protein kinase domain 149 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1588 449 ProSiteProfiles Protein kinase domain profile. 147 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1588 449 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524(InterPro)
Cco03g1588 449 FunFam Mitogen-activated protein kinase kinase 6 117 226 - -
Cco03g1588 449 FunFam Mitogen-activated protein kinase kinase 6 228 421 - -
Cco03g1588 449 SUPERFAMILY Protein kinase-like (PK-like) 132 421 IPR011009 -
Cco03g1588 449 MobiDBLite consensus disorder prediction 55 80 - -
Cco03g1588 449 CDD PKc_MAPKK_plant_like 145 411 - -
Cco03g1588 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1588 449 Gene3D Phosphorylase Kinase; domain 1 123 226 - -
Cco03g1588 449 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 28 423 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco03g1588 449 SMART serkin_6 147 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1588 K20603 - - csv:101204545 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1588 Cco-Chr3:30499278 Cco11g0228 Cco-Chr11:2210164 8.70E-125 dispersed
Cco03g1588 Cco-Chr3:30499278 Cco03g1590 Cco-Chr3:30519130 1.20E-16 proximal
Cco11g0187 Cco-Chr11:1842301 Cco03g1588 Cco-Chr3:30499278 4.30E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g1588 . 104 409 MAP Kinase Kinase Gene Family AT4G26070 71.6 9.9e-129 456.8
Cco11g0187 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 9.3e-119 423.7
Cco11g0228 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 56.0 3.3e-108 388.7
Cco03g1588 . 77 402 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.3e-133 472.2
Cco11g0187 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.0e-117 418.7
Cco11g0228 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 1.2e-110 396.7
Cco10g1377 . 61 543 MAP Kinase Kinase Gene Family AT5G40440 79.5 2.1e-228 788.5
Cco07g1499 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cco07g1499 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.3e-128 456.4
Cco01g1633 . 39 311 MAP Kinase Kinase Gene Family AT3G21220 54.2 1.2e-84 310.5
Cco11g0228 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 84.3 7.1e-170 593.6
Cco03g1588 . 83 408 MAP Kinase Kinase Gene Family AT5G56580 61.5 7.7e-116 414.1
Cco11g0187 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.2e-104 374.8
Cco01g1633 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.6e-109 392.9
Cco01g1633 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.1 1.3e-81 300.1
Cco01g1633 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.6e-114 409.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86690 PF00069 Pkinase 8.60E-72 CL0016 Cco PK