Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1588 ATGGTCAAATTTGGTGATTCAAAAGATGATTTTGTAAGAAAATTCAAAGAAAAAGAAAAGTCAAAGATTCAAAAGAAGGAAAGAGGGAAGAAACGTATACGATCCCGCATCTTCCAATCCAATCCGACCAAACACAGCCGTATTTTTATTAAATCAGCTAATCATCCAAAAAGCTTCAATTCGAGCATCAATTCTACACGGTTGCAGCCTGGAAGAGATCCGCCATCAATGAGGAAGGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAGTCTTCCTCAAGAAGAACAATCCATAGCGACGTTTTTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGTATTGTTTCTCAAAGCGAAGTTGAAGCACCACCTCCAATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCCGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTGGGAGAGAGGTATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACTGGAAAATTTCCTTATTCTCCACCAGAACAAGATGGAGGATGGGTGAACTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCGGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGATCTCCACTTGCAACTTTCTAAATTTTATCTGTCGATCGTCTCTGGCTCGTACACGGGAATCTCAATTGTTTGCTGCTTGCAAGGATGGAGAAGGAATCCACCGCAATCTCACTTTCTCATGA 1350 41.11 MVKFGDSKDDFVRKFKEKEKSKIQKKERGKKRIRSRIFQSNPTKHSRIFIKSANHPKSFNSSINSTRLQPGRDPPSMRKGGFSNNLNLKLSLPQEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQTDPKDRLSARELLEHPFIKMISTCNFLNFICRSSLARTRESQLFAACKDGEGIHRNLTFS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30499278 30503867 + CcPI632755_03g015880.1 Cco03g1588 174947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1588 449 Gene3D Transferase(Phosphotransferase) domain 1 227 431 - -
Cco03g1588 449 MobiDBLite consensus disorder prediction 55 71 - -
Cco03g1588 449 Pfam Protein kinase domain 149 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1588 449 ProSiteProfiles Protein kinase domain profile. 147 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1588 449 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524(InterPro)
Cco03g1588 449 FunFam Mitogen-activated protein kinase kinase 6 117 226 - -
Cco03g1588 449 FunFam Mitogen-activated protein kinase kinase 6 228 421 - -
Cco03g1588 449 SUPERFAMILY Protein kinase-like (PK-like) 132 421 IPR011009 -
Cco03g1588 449 MobiDBLite consensus disorder prediction 55 80 - -
Cco03g1588 449 CDD PKc_MAPKK_plant_like 145 411 - -
Cco03g1588 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1588 449 Gene3D Phosphorylase Kinase; domain 1 123 226 - -
Cco03g1588 449 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 28 423 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco03g1588 449 SMART serkin_6 147 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1588 Cco-Chr3:30499278 Cco11g0228 Cco-Chr11:2210164 8.70E-125 dispersed
Cco03g1588 Cco-Chr3:30499278 Cco03g1590 Cco-Chr3:30519130 1.20E-16 proximal
Cco11g0187 Cco-Chr11:1842301 Cco03g1588 Cco-Chr3:30499278 4.30E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86690 PF00069 Pkinase 8.60E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1588 K20603 - csv:101204545 651.358