Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1590 ATGGAGAATCATCAGGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCTCCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTGAAGAACGCAAAGAGAGGCGCTCAGTGCTTGAAAAGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACGGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTTGAGGATTTCAACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTAGCTAGATTTTACGTTGCGCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTGTCTGCTATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGATACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGTGGGAGACGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGCCGAGAATAGGCTTGGTTCTGGAGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTACGACATGGATGCAGCATTTAAGCCCGAGGTCAATGGGGAACTTGATACGCAGAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCATTTGATTTGATGTCAAACACCACCCCCATTCGAACTTCGTCTATTGACTCTACTAAAAGTGACTCGGCATTGAATAACTACTCTATCACCTACTCACCAGATGACAGGGAAACCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1614 42.44 MENHQEVEAEEEDEVGPSAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIEERKERRSVLEKKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSAINENEVLDDENLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDTEWDKLYDMDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLSFVGYTYKNFEAVKGLHHSFDLMSNTTPIRTSSIDSTKSDSALNNYSITYSPDDRETILASSGDALSQ 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30519130 30526875 - CcPI632755_03g015900.1 Cco03g1590 174949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1590 537 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 SMART pkinase_C_6 414 478 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 FunFam Non-specific serine/threonine protein kinase 432 442 - -
Cco03g1590 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 482 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco03g1590 537 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Cco03g1590 537 SMART serkin_6 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 FunFam Non-specific serine/threonine protein kinase 312 431 - -
Cco03g1590 537 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 Pfam Protein kinase domain 107 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 CDD MobB_NDR_LATS-like 40 101 - -
Cco03g1590 537 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Cco03g1590 537 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Cco03g1590 537 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 FunFam Non-specific serine/threonine protein kinase 67 189 - -
Cco03g1590 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 Gene3D Transferase(Phosphotransferase) domain 1 192 430 - -
Cco03g1590 537 MobiDBLite consensus disorder prediction 1 20 - -
Cco03g1590 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1590 537 CDD STKc_NDR_like 104 477 - -
Cco03g1590 537 SUPERFAMILY Protein kinase-like (PK-like) 88 462 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1590 Cco-Chr3:30519130 Cco04g2329 Cco-Chr4:36752094 1.30E-178 dispersed
Cco03g1588 Cco-Chr3:30499278 Cco03g1590 Cco-Chr3:30519130 1.20E-16 proximal
Cco01g0546 Cco-Chr1:5318404 Cco03g1590 Cco-Chr3:30519130 5.10E-68 transposed
Cco06g0736 Cco-Chr6:8388269 Cco03g1590 Cco-Chr3:30519130 2.70E-185 transposed
Cco09g0775 Cco-Chr9:7115546 Cco03g1590 Cco-Chr3:30519130 1.10E-183 transposed
Cco03g1590 Cco-Chr3:30519130 Cco05g2046 Cco-Chr5:29528296 2.20E-223 wgd
Cco03g1590 Cco-Chr3:30519130 Cco08g1903 Cco-Chr8:30030380 4.40E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86691 PF00069 Pkinase 5.00E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1590 K08790 - csv:101208238 994.571