Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1609 | ATGGAGGAGGTTCTGATTCTTCAACTGGTGATTCTTTGTCTCTTCATTGCTGTTAATGCTTCCAACCTTGGGGAAATTGCTGGATTCAGCTACTCTCCACCCCCTTCAAGTTTTCAAGCATTTCCTCCGGTTTTAGGAACACCTGGTCCAGTCCAACATGAAAAATCGTTGATAATCAATGGACCAAGCTCAGCGCCTCAGCAAAATGAGTCAACTTTGCAACCACCAGTTATGTTACCAGCAATTGCTCCAGGTCTGTTGCCTGATACGATCAAAGGGTTTATACCATCCACTTCACCCCATGCTCCGACCGAGTCGCCACCATTTAATAGTATGCCTCAGCCACCTTTACCAGTTCAACCAAATGCACCATTGGTTTCACCAAGTGCACCAGAACCAGAAGATCCAGCTGTGTCATCTTCAAATTCTCCACATTATCCTCCAGCAAGTTCCCCGCATGAGCATACAAATATTTCATCGAGTTCTCATCAAATCACTTCACCAAATGTAGCTCCAATCCCCGAGCCAATTTCCCCAGCAAGCAAGTTGCCCAAGAACTCACCAGCTAGTCATCCGGTAGTTCCTGAAAGACCTCCATCCACATTACCAGAGCCCAATATCTCTCCAATGGTGGCTATTTCCCCAAAAGCTGGTGACAGAAATAGATTAGAAGCACCAGCAGCTACACCTTATAATGCACTGCCCAAGTATACGCCACCTGTGTCTCATTCCCCAGAAGAAGCTCCTTCCAGTCACAATGACATGGGACATTCTCTTGACGCCCAACAGCCGATCCTTCCACCACAAAAAGCTCCGTTTCATAGAGTAAATCTTTCTCCAACATCTCCTCCTTTGCCCTCAAATTATAAGCATCACAGAAGGAAGAATTATATCATCAGTCACGCACCTGCACCTGCACCTGCACCATCATATCCAATTTCCTCCCCCACGACAAGAACACCAGGTCCACTTATTTCTACAGCACAACATTCGCCAGGCAGACGACATCATGCTCCACCTCCGGAATCAGAACCTTCGCCAATTTCTCCTTCACAATATGCTCTGCCACCACCGCTTGTGACGCATGGTTCGCCTTCTCCTTCACCACACCAAAAAGTAGCTGGGCATGCTAGAAGACATTTTTATCCTCCGAAAGCTTCACCGCTGAAACCTTGGGCAAAAAGCCCAAAGATGCCACCAATTCATACGTTGCCTCCTCCACCTCCCAATGAAAATTGTTTAGCTACCCAGTGCACCGAGCCGTATACAAATACTCCCCCAGGATCTCCCTGCGGTTGTGTTTGGCCCATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACCTTCTTCCCTCTGGTTTCAGAGCTGGCAGCGGAAATTGCTGTTGCGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTCCTTATTGATTTAGTTCCACTTGGCGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAGGTTTCGATCAAAACTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGATTCAGGACTAGATAATGAGCCTTATTTCAGTAATAGTAATGATGCGAGGACAGTAAAACCAATCGGTGTTGATGTGCAGAACAGACAGCACAAAGATAGGCTAAGTGGTGGTATGATTGCCATCGTTGCCCTATCAACTACTGTTGCAGTGGTCTTATGTGTTGCAACTGCTTGGATTTTGCTCTTCAAACGCAATGATGGCCTTTGTCAGCCAAAACCGACTCCGCATGTTTCGTTATCCTCCCTCAATAAACCATCAGGTGCTGGTGGATCAGTCATGGCAACCATGCCTAGTTCAGCATCTTTATCCTTTGGATCTAGCATTGCCCCATATTCAGGGTCAGCCAAGACATTCAGCGCCTCTGACATTGAGAGAGCCACCAATGATTTTGATCCTTCAAGAATATTGGGAGAGGGTGGCTTTGGACGTGTTTACAAAGGCGTTCTCCAAGATGGTACCGAAGTAGCAGTCAAAGTTCTCAAGAGAGATGATCATCAGGGTGGTCGAGAATTCCTGGCTGAAGTTGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAACGTAGCCGCGCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGCTGCCCGGATCAAGATAGCACTTGGCGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGCAATATCTTGTTAGAAAATGATTTTACACCAAAGGTTTCTGACTTTGGGTTGGCTAGAACTGCAACGGATGAGGAAAGCAGACACATATCAACACGTGTCATGGGAACTTTCGGGTACGTGGCGCCAGAGTATGCAATGACTGGTCATCTACTTGTGAAGAGTGACGTTTATAGCTACGGGGTCGTTCTTCTTGAGCTATTAACTGGCAGGAAACCAGTCGATATGTCGCAGCCACCCGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCTCTCCTCACAAGCAAAGAAGGCCTAGATGTTATAATTGACAAATCACTAGATTCTAATATTCCTTTCGAAAATATTGCTAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCGGAGGTGTCACATCGACCTTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACAAGGCTCGAGAAACAAGCTCACTGGCTGGTTCAAGCCCAGAGAGTTCAACTATCAATACAAATGATGATGAGACATCAAGCTCAAGATACATGCTAGACTCTTTTCATAGCGAATATTTAATACCTAACTCAATTTCGAGTCTAGATGGCATCGATACACATCTCTCAATTTCAGACCTGTTAAATACTTCAATTGGTATCGGAATGCAGGAATCTAGATCGCTTGAAAGATGCTTCAGTTCCGATCCTCCTAGAATCGGAAAAGGCAGAAGGCAGTTCTGGCAAAGAATGAGAAGATACTCAGAAAGTAGCATAAGTGAACATGGAATGCCTACTAGAATATGGTCAGCTTGGCAGTGCTACATGCAACAACTTGTTGGAATTGTGGAGCAAAAGTTCAATCACTTGATTGATGAATTGGGCCATACAAGAACAGTTGTCCTCTAA | 3315 | 45.16 | MEEVLILQLVILCLFIAVNASNLGEIAGFSYSPPPSSFQAFPPVLGTPGPVQHEKSLIINGPSSAPQQNESTLQPPVMLPAIAPGLLPDTIKGFIPSTSPHAPTESPPFNSMPQPPLPVQPNAPLVSPSAPEPEDPAVSSSNSPHYPPASSPHEHTNISSSSHQITSPNVAPIPEPISPASKLPKNSPASHPVVPERPPSTLPEPNISPMVAISPKAGDRNRLEAPAATPYNALPKYTPPVSHSPEEAPSSHNDMGHSLDAQQPILPPQKAPFHRVNLSPTSPPLPSNYKHHRRKNYIISHAPAPAPAPSYPISSPTTRTPGPLISTAQHSPGRRHHAPPPESEPSPISPSQYALPPPLVTHGSPSPSPHQKVAGHARRHFYPPKASPLKPWAKSPKMPPIHTLPPPPPNENCLATQCTEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAVAVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKTSYFGNYEVLYVRYPGLPQSPPSGDSGLDNEPYFSNSNDARTVKPIGVDVQNRQHKDRLSGGMIAIVALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVSLSSLNKPSGAGGSVMATMPSSASLSFGSSIAPYSGSAKTFSASDIERATNDFDPSRILGEGGFGRVYKGVLQDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRALVYELIPNGSVESHLHGVDKETAPLDWAARIKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLENDFTPKVSDFGLARTATDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSKEGLDVIIDKSLDSNIPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNKARETSSLAGSSPESSTINTNDDETSSSRYMLDSFHSEYLIPNSISSLDGIDTHLSISDLLNTSIGIGMQESRSLERCFSSDPPRIGKGRRQFWQRMRRYSESSISEHGMPTRIWSAWQCYMQQLVGIVEQKFNHLIDELGHTRTVVL | 1104 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30760811 | 30766652 | + | CcPI632755_03g016090.1 | Cco03g1609 | 174968 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 342 | 364 | - | - | |
Cco03g1609 | 1104 | PANTHER | OS01G0750732 PROTEIN | 411 | 991 | IPR050885 | - | |
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 101 | 131 | - | - | |
Cco03g1609 | 1104 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 797 | 809 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 134 | 171 | - | - | |
Cco03g1609 | 1104 | ProSitePatterns | Protein kinases ATP-binding region signature. | 681 | 703 | IPR017441 | GO:0005524(InterPro) | |
Cco03g1609 | 1104 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 751 | 965 | - | - | |
Cco03g1609 | 1104 | Pfam | Protein tyrosine and serine/threonine kinase | 679 | 948 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g1609 | 1104 | FunFam | receptor-like serine/threonine-protein kinase ALE2 | 648 | 750 | - | - | |
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 244 | 258 | - | - | |
Cco03g1609 | 1104 | Gene3D | Phosphorylase Kinase; domain 1 | 651 | 750 | - | - | |
Cco03g1609 | 1104 | ProSiteProfiles | Protein kinase domain profile. | 675 | 951 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 90 | 376 | - | - | |
Cco03g1609 | 1104 | Gene3D | Transferase(Phosphotransferase) domain 1 | 751 | 969 | - | - | |
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 191 | 205 | - | - | |
Cco03g1609 | 1104 | SUPERFAMILY | Protein kinase-like (PK-like) | 655 | 948 | IPR011009 | - | |
Cco03g1609 | 1104 | CDD | STKc_IRAK | 681 | 949 | - | - | |
Cco03g1609 | 1104 | MobiDBLite | consensus disorder prediction | 961 | 981 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1609 | Cco-Chr3:30760811 | Cco07g0149 | Cco-Chr7:1521741 | 1.70E-177 | dispersed | |
Cco03g1609 | Cco-Chr3:30760811 | Cco09g0061 | Cco-Chr9:532185 | 2.50E-205 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86692 | PF07714 | PK_Tyr_Ser-Thr | 3.30E-49 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1609 | - | - | - | 0.0 |