Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1609 ATGGAGGAGGTTCTGATTCTTCAACTGGTGATTCTTTGTCTCTTCATTGCTGTTAATGCTTCCAACCTTGGGGAAATTGCTGGATTCAGCTACTCTCCACCCCCTTCAAGTTTTCAAGCATTTCCTCCGGTTTTAGGAACACCTGGTCCAGTCCAACATGAAAAATCGTTGATAATCAATGGACCAAGCTCAGCGCCTCAGCAAAATGAGTCAACTTTGCAACCACCAGTTATGTTACCAGCAATTGCTCCAGGTCTGTTGCCTGATACGATCAAAGGGTTTATACCATCCACTTCACCCCATGCTCCGACCGAGTCGCCACCATTTAATAGTATGCCTCAGCCACCTTTACCAGTTCAACCAAATGCACCATTGGTTTCACCAAGTGCACCAGAACCAGAAGATCCAGCTGTGTCATCTTCAAATTCTCCACATTATCCTCCAGCAAGTTCCCCGCATGAGCATACAAATATTTCATCGAGTTCTCATCAAATCACTTCACCAAATGTAGCTCCAATCCCCGAGCCAATTTCCCCAGCAAGCAAGTTGCCCAAGAACTCACCAGCTAGTCATCCGGTAGTTCCTGAAAGACCTCCATCCACATTACCAGAGCCCAATATCTCTCCAATGGTGGCTATTTCCCCAAAAGCTGGTGACAGAAATAGATTAGAAGCACCAGCAGCTACACCTTATAATGCACTGCCCAAGTATACGCCACCTGTGTCTCATTCCCCAGAAGAAGCTCCTTCCAGTCACAATGACATGGGACATTCTCTTGACGCCCAACAGCCGATCCTTCCACCACAAAAAGCTCCGTTTCATAGAGTAAATCTTTCTCCAACATCTCCTCCTTTGCCCTCAAATTATAAGCATCACAGAAGGAAGAATTATATCATCAGTCACGCACCTGCACCTGCACCTGCACCATCATATCCAATTTCCTCCCCCACGACAAGAACACCAGGTCCACTTATTTCTACAGCACAACATTCGCCAGGCAGACGACATCATGCTCCACCTCCGGAATCAGAACCTTCGCCAATTTCTCCTTCACAATATGCTCTGCCACCACCGCTTGTGACGCATGGTTCGCCTTCTCCTTCACCACACCAAAAAGTAGCTGGGCATGCTAGAAGACATTTTTATCCTCCGAAAGCTTCACCGCTGAAACCTTGGGCAAAAAGCCCAAAGATGCCACCAATTCATACGTTGCCTCCTCCACCTCCCAATGAAAATTGTTTAGCTACCCAGTGCACCGAGCCGTATACAAATACTCCCCCAGGATCTCCCTGCGGTTGTGTTTGGCCCATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACCTTCTTCCCTCTGGTTTCAGAGCTGGCAGCGGAAATTGCTGTTGCGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTCCTTATTGATTTAGTTCCACTTGGCGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAGGTTTCGATCAAAACTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGATTCAGGACTAGATAATGAGCCTTATTTCAGTAATAGTAATGATGCGAGGACAGTAAAACCAATCGGTGTTGATGTGCAGAACAGACAGCACAAAGATAGGCTAAGTGGTGGTATGATTGCCATCGTTGCCCTATCAACTACTGTTGCAGTGGTCTTATGTGTTGCAACTGCTTGGATTTTGCTCTTCAAACGCAATGATGGCCTTTGTCAGCCAAAACCGACTCCGCATGTTTCGTTATCCTCCCTCAATAAACCATCAGGTGCTGGTGGATCAGTCATGGCAACCATGCCTAGTTCAGCATCTTTATCCTTTGGATCTAGCATTGCCCCATATTCAGGGTCAGCCAAGACATTCAGCGCCTCTGACATTGAGAGAGCCACCAATGATTTTGATCCTTCAAGAATATTGGGAGAGGGTGGCTTTGGACGTGTTTACAAAGGCGTTCTCCAAGATGGTACCGAAGTAGCAGTCAAAGTTCTCAAGAGAGATGATCATCAGGGTGGTCGAGAATTCCTGGCTGAAGTTGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAACGTAGCCGCGCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGCTGCCCGGATCAAGATAGCACTTGGCGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGCAATATCTTGTTAGAAAATGATTTTACACCAAAGGTTTCTGACTTTGGGTTGGCTAGAACTGCAACGGATGAGGAAAGCAGACACATATCAACACGTGTCATGGGAACTTTCGGGTACGTGGCGCCAGAGTATGCAATGACTGGTCATCTACTTGTGAAGAGTGACGTTTATAGCTACGGGGTCGTTCTTCTTGAGCTATTAACTGGCAGGAAACCAGTCGATATGTCGCAGCCACCCGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCTCTCCTCACAAGCAAAGAAGGCCTAGATGTTATAATTGACAAATCACTAGATTCTAATATTCCTTTCGAAAATATTGCTAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCGGAGGTGTCACATCGACCTTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACAAGGCTCGAGAAACAAGCTCACTGGCTGGTTCAAGCCCAGAGAGTTCAACTATCAATACAAATGATGATGAGACATCAAGCTCAAGATACATGCTAGACTCTTTTCATAGCGAATATTTAATACCTAACTCAATTTCGAGTCTAGATGGCATCGATACACATCTCTCAATTTCAGACCTGTTAAATACTTCAATTGGTATCGGAATGCAGGAATCTAGATCGCTTGAAAGATGCTTCAGTTCCGATCCTCCTAGAATCGGAAAAGGCAGAAGGCAGTTCTGGCAAAGAATGAGAAGATACTCAGAAAGTAGCATAAGTGAACATGGAATGCCTACTAGAATATGGTCAGCTTGGCAGTGCTACATGCAACAACTTGTTGGAATTGTGGAGCAAAAGTTCAATCACTTGATTGATGAATTGGGCCATACAAGAACAGTTGTCCTCTAA 3315 45.16 MEEVLILQLVILCLFIAVNASNLGEIAGFSYSPPPSSFQAFPPVLGTPGPVQHEKSLIINGPSSAPQQNESTLQPPVMLPAIAPGLLPDTIKGFIPSTSPHAPTESPPFNSMPQPPLPVQPNAPLVSPSAPEPEDPAVSSSNSPHYPPASSPHEHTNISSSSHQITSPNVAPIPEPISPASKLPKNSPASHPVVPERPPSTLPEPNISPMVAISPKAGDRNRLEAPAATPYNALPKYTPPVSHSPEEAPSSHNDMGHSLDAQQPILPPQKAPFHRVNLSPTSPPLPSNYKHHRRKNYIISHAPAPAPAPSYPISSPTTRTPGPLISTAQHSPGRRHHAPPPESEPSPISPSQYALPPPLVTHGSPSPSPHQKVAGHARRHFYPPKASPLKPWAKSPKMPPIHTLPPPPPNENCLATQCTEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAVAVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKTSYFGNYEVLYVRYPGLPQSPPSGDSGLDNEPYFSNSNDARTVKPIGVDVQNRQHKDRLSGGMIAIVALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVSLSSLNKPSGAGGSVMATMPSSASLSFGSSIAPYSGSAKTFSASDIERATNDFDPSRILGEGGFGRVYKGVLQDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRALVYELIPNGSVESHLHGVDKETAPLDWAARIKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLENDFTPKVSDFGLARTATDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSKEGLDVIIDKSLDSNIPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNKARETSSLAGSSPESSTINTNDDETSSSRYMLDSFHSEYLIPNSISSLDGIDTHLSISDLLNTSIGIGMQESRSLERCFSSDPPRIGKGRRQFWQRMRRYSESSISEHGMPTRIWSAWQCYMQQLVGIVEQKFNHLIDELGHTRTVVL 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30760811 30766652 + CcPI632755_03g016090.1 Cco03g1609 174968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1609 1104 MobiDBLite consensus disorder prediction 342 364 - -
Cco03g1609 1104 PANTHER OS01G0750732 PROTEIN 411 991 IPR050885 -
Cco03g1609 1104 MobiDBLite consensus disorder prediction 101 131 - -
Cco03g1609 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1609 1104 MobiDBLite consensus disorder prediction 134 171 - -
Cco03g1609 1104 ProSitePatterns Protein kinases ATP-binding region signature. 681 703 IPR017441 GO:0005524(InterPro)
Cco03g1609 1104 FunFam Receptor-like serine/threonine-protein kinase ALE2 751 965 - -
Cco03g1609 1104 Pfam Protein tyrosine and serine/threonine kinase 679 948 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1609 1104 FunFam receptor-like serine/threonine-protein kinase ALE2 648 750 - -
Cco03g1609 1104 MobiDBLite consensus disorder prediction 244 258 - -
Cco03g1609 1104 Gene3D Phosphorylase Kinase; domain 1 651 750 - -
Cco03g1609 1104 ProSiteProfiles Protein kinase domain profile. 675 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1609 1104 MobiDBLite consensus disorder prediction 90 376 - -
Cco03g1609 1104 Gene3D Transferase(Phosphotransferase) domain 1 751 969 - -
Cco03g1609 1104 MobiDBLite consensus disorder prediction 191 205 - -
Cco03g1609 1104 SUPERFAMILY Protein kinase-like (PK-like) 655 948 IPR011009 -
Cco03g1609 1104 CDD STKc_IRAK 681 949 - -
Cco03g1609 1104 MobiDBLite consensus disorder prediction 961 981 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1609 Cco-Chr3:30760811 Cco07g0149 Cco-Chr7:1521741 1.70E-177 dispersed
Cco03g1609 Cco-Chr3:30760811 Cco09g0061 Cco-Chr9:532185 2.50E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86692 PF07714 PK_Tyr_Ser-Thr 3.30E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1609 - - - 0.0