Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1622 ATGAGGTTATCGTCCTCTGCAATTCTTGTCCTCTTTCTCTTCTTTCACCTTCTTCTTTGCGTTGCTACTTTCCCTTCCTTTTCCATTTCCCTCTTAACCGTCACTAAATCCGAGTTGGTGCCCGGCGAGATCAATGCTACTGCCGACTCTAACTCCTCGAGATCCGCCAATGATGACCACAGTTTTGCTAACATAATCGACCGGGCTCTCGAGAGGGAATTTACTGAGAATGAGCAGACTGATGAAGTCGCGGATGCTGGCAGCTTCAACAACAGCGTTGCTGAGAAGCAGGCAGTTTTGGAAACTGTTGCTCGAGTTAAGTCAAAGAAGAATGAGTCGAAAGAGGAGAAATCATTTCAGTTCCATGATGTCTTCCATTTAGATAATGAGAATCGAGCAGAAGACATGCCCACATTAATTGATCGGAAGGACAATGTTTTTATTATATCCAATCCCAAGTCAAAGTATCCCGTGCTCCAATTGGATTTAAGGTTGATTTCAGATCTAGTTGTTGTTATTGTTTCTGCAACTTGTGGTGGCATTGCTTTTGCTTGTGCAGGACAACCGGTCTTTACTGGATACCTGTTGGCTGGATCTCTCATTGGACCTGGAGGTTTAAGCTTTGTCAGCGAAATGGTGCAAGTTGAGACAGTTGCTCAGTTTGGTGTGATCTTCCTTCTTTTTGCATTGGGCCTGGAATTCTCCACTACAAAACTTCGTGTGGTTCGAGCAGTGGCTGTTCTTGGAGGATTGCTCCAAATTTTCCTTTTTATGTGCTTGTGTGGAATTACAGCTTCGCTATGTGGTGGTAAATCTTCAGAGGGTGTATTTGTTGGTGCATTCTTGTCTATGTCTTCGACTGCAGTGGTCTTGAAATTTTTAATGGAACGAAATAGCGTCAATGCCATTCATGGTCAGGTGACCATTGGTACTCTTATTCTTCAGGATTGTGCTGTTGGCTTGCTGTTTGCGCTGCTTCCGATTCTTGGTGGTACTTCTGGTGTTCTTCAAGGAGTTCTGTCCATGACTAAGTCGTTGGTGGTCCTGATTACGTTTTTGATTATTTTGACAATATTATCTCGTACATGTGTTCCGAGGTTCCTTAAGCTTATGATTAGCTTGTCATCTCAGACTAATGAGCTCTATCAATTGGCAGCTGTTGCATTCTGCTTGCTTGTTGCTTGGTGCAGTGATAAACTGGGCTTAAGCCTTGAATTGGGTTCCTTTGCTGCTGGTGTGATGATATCAACTACTGATCTTGCTCAGCATACACTTGAACAGGTTGAGCCCATTCGCAACTTCTTTGCTGCTCTTTTTCTTGCCAGCATTGGGATGCTAATTCATGTTCATTTCCTATGGAACCACATTGATATTTTACTTGCGGCTGTAATATTGGTCATCATTATAAAAACTGTAGTGGTTACTACTGTTGTCAAGGGATTTGGATACAACAACAAGACTTCACTTCTGGTTGGGATGTCACTTGCACAAATTGGAGAATTTGCTTTTGTCCTTCTAAGCCGTGCCTCTAATCTCCATCTTGTTGAGGGAAAATTGTATATACTGCTGCTTGGGACAACTGCACTTAGCCTGGTGACTACGCCATTGCTTTTCAAGCTTATTCCTGCCGTGGTACGTATTGGAGTGTTGTTGCGGTGGTTTTCACCTGATGGTTTGAGTGAGATTGGATTCAAAGGAGAGGGCTTTCGAACGGATGGTGCCAAGCGCATTACTTTGGTGGTTCAAGACTCTCATGTTTCATGA 1764 43.37 MRLSSSAILVLFLFFHLLLCVATFPSFSISLLTVTKSELVPGEINATADSNSSRSANDDHSFANIIDRALEREFTENEQTDEVADAGSFNNSVAEKQAVLETVARVKSKKNESKEEKSFQFHDVFHLDNENRAEDMPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVFTGYLLAGSLIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMCLCGITASLCGGKSSEGVFVGAFLSMSSTAVVLKFLMERNSVNAIHGQVTIGTLILQDCAVGLLFALLPILGGTSGVLQGVLSMTKSLVVLITFLIILTILSRTCVPRFLKLMISLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHIDILLAAVILVIIIKTVVVTTVVKGFGYNNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYILLLGTTALSLVTTPLLFKLIPAVVRIGVLLRWFSPDGLSEIGFKGEGFRTDGAKRITLVVQDSHVS 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30899477 30910191 + CcPI632755_03g016220.1 Cco03g1622 174981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1622 587 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 46 565 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Cco03g1622 587 Gene3D - 163 546 IPR038770 -
Cco03g1622 587 Pfam Sodium/hydrogen exchanger family 173 539 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1622 Cco-Chr3:30899477 Cco05g0909 Cco-Chr5:7823209 7.50E-185 dispersed
Cco03g1622 Cco-Chr3:30899477 Cco08g1878 Cco-Chr8:29805265 8.40E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1622 K26735 - csv:101208614 1030.01