Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1625 | ATGGAGAAGGGTGATCTAGATGTGGCTGGGAAAGTGGTGGTTGTCGCCATTAAAGCCACCTCGAAGGAAGTTTCTAAGGCTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAGCCTGGAGATCATATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGGGGATTTTCTCGACTTACTAGCGACTGTGCGATTGGTCATCTGAGAACTCCTTCAGGAACTTTTTCCGATCGGAAGGATGACATTGTGCATTCATGTTCTCAGATGGTACATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTCAGGATCAAAATTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGATAAGAATTTGAAGGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAAATAAATACTAGAGAACCTTGGGTATCATCGCATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTATTTCGATGAATCGATCATGTTTAGGGCTCCTGATGTGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTCTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCAGATGTAGGCAGTTCATCCTTGTTCTCTGGGATTTGTGGCAGCTTGAGAAATGAATCCAGAACAGCAGCCGACGGAGGGAGAAATATGTCTGGTTCTGAATATGATTCTGAGAGCGAAAAGCAAACTCCCTCAGTTTCGTATTTCCAGCGTTGTATGGTTGATATCATAAGTTCCAGGCGTAAATTCCAGCAACGCGCAATGGAAGAATCACAAAATGCTCATCATAGACCTCCGGCTCCAACACGTCAAGGTCTGGTAAAAAAAATGCCTAATCTTTCTCTAGAACCTAGCACTGATGTGGCGCATTGCAATACCGAAATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTATCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTGTGTTCTATGTGCCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCGGAACTTGAAGTTGCTACAAGTGGGTTTGCACAAACAAATTTTTTGGCTGAGGGTGGATTTGGGTCTGTGCACCGAGGCGTCTTATCAGATGGACAAGTCGTTGCTGTCAAGCAATATAAACTGGCTAGTACCCAGGGAGATCGAGAGTTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAATGTTGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTATATGGGAGAAACCGCGATCCACTGAAATGGTCTGCACGACAAAAGATTGCAGTCGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTCGAGCCACTAGTCGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGCGACCTAGCAGTAGAAACTAGAATCCTTGGGAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCTGATACATACTCGTTTGGCGTAGTGTTGCTGGAACTCGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCGCGAAACCTGTTGCGGAAAGATGCGATCTCCGAACTAGTCGATCCATGTTTGAGGAACTGTTATTCAGACGAGGAAGTTCACCGAATGCTGCAATGCGCTTCCTTGTGCATCAAGCGCGATCCGTATGTAAGACCGCGCATGTCTCAGGTGCTTCGGGTTTTGGAGGGCGACATCGTTTTGTAA | 2016 | 45.63 | MEKGDLDVAGKVVVVAIKATSKEVSKAALVWALTHVVQPGDHIKLLVVIPSHQSSKWMRGFSRLTSDCAIGHLRTPSGTFSDRKDDIVHSCSQMVHQLHGAYDPLKIKVRIKILSGLARGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKINTREPWVSSHELDVSQKCLKSYFDESIMFRAPDVTPDSTPDVESPLTVTDIGTSSISSSDVGSSSLFSGICGSLRNESRTAADGGRNMSGSEYDSESEKQTPSVSYFQRCMVDIISSRRKFQQRAMEESQNAHHRPPAPTRQGLVKKMPNLSLEPSTDVAHCNTEISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGVLSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKDAISELVDPCLRNCYSDEEVHRMLQCASLCIKRDPYVRPRMSQVLRVLEGDIVL | 671 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30937058 | 30940887 | - | CcPI632755_03g016250.1 | Cco03g1625 | 174984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1625 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 471 | 669 | - | - | |
Cco03g1625 | 671 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 516 | 528 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g1625 | 671 | ProSiteProfiles | Protein kinase domain profile. | 395 | 671 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g1625 | 671 | CDD | STKc_IRAK | 401 | 667 | - | - | |
Cco03g1625 | 671 | SUPERFAMILY | Protein kinase-like (PK-like) | 378 | 663 | IPR011009 | - | |
Cco03g1625 | 671 | MobiDBLite | consensus disorder prediction | 253 | 276 | - | - | |
Cco03g1625 | 671 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 367 | 470 | - | - | |
Cco03g1625 | 671 | Pfam | Protein tyrosine and serine/threonine kinase | 399 | 664 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g1625 | 671 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 471 | 671 | - | - | |
Cco03g1625 | 671 | PANTHER | OS01G0750732 PROTEIN | 168 | 666 | IPR050885 | - | |
Cco03g1625 | 671 | SMART | tyrkin_6 | 395 | 665 | IPR020635 | GO:0004713(InterPro)|GO:0006468(InterPro) | |
Cco03g1625 | 671 | Gene3D | Phosphorylase Kinase; domain 1 | 366 | 470 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1625 | Cco-Chr3:30937058 | Cco05g2185 | Cco-Chr5:30650028 | 3.30E-144 | dispersed | |
Cco02g1295 | Cco-Chr2:24646985 | Cco03g1625 | Cco-Chr3:30937058 | 1.20E-64 | transposed | |
Cco03g1625 | Cco-Chr3:30937058 | Cco07g1440 | Cco-Chr7:28506796 | 1.60E-228 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86693 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-41 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1625 | - | - | - | 0.0 |