Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1625 ATGGAGAAGGGTGATCTAGATGTGGCTGGGAAAGTGGTGGTTGTCGCCATTAAAGCCACCTCGAAGGAAGTTTCTAAGGCTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAGCCTGGAGATCATATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGGGGATTTTCTCGACTTACTAGCGACTGTGCGATTGGTCATCTGAGAACTCCTTCAGGAACTTTTTCCGATCGGAAGGATGACATTGTGCATTCATGTTCTCAGATGGTACATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTCAGGATCAAAATTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGATAAGAATTTGAAGGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAAATAAATACTAGAGAACCTTGGGTATCATCGCATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTATTTCGATGAATCGATCATGTTTAGGGCTCCTGATGTGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTCTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCAGATGTAGGCAGTTCATCCTTGTTCTCTGGGATTTGTGGCAGCTTGAGAAATGAATCCAGAACAGCAGCCGACGGAGGGAGAAATATGTCTGGTTCTGAATATGATTCTGAGAGCGAAAAGCAAACTCCCTCAGTTTCGTATTTCCAGCGTTGTATGGTTGATATCATAAGTTCCAGGCGTAAATTCCAGCAACGCGCAATGGAAGAATCACAAAATGCTCATCATAGACCTCCGGCTCCAACACGTCAAGGTCTGGTAAAAAAAATGCCTAATCTTTCTCTAGAACCTAGCACTGATGTGGCGCATTGCAATACCGAAATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTATCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTGTGTTCTATGTGCCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCGGAACTTGAAGTTGCTACAAGTGGGTTTGCACAAACAAATTTTTTGGCTGAGGGTGGATTTGGGTCTGTGCACCGAGGCGTCTTATCAGATGGACAAGTCGTTGCTGTCAAGCAATATAAACTGGCTAGTACCCAGGGAGATCGAGAGTTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAATGTTGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTATATGGGAGAAACCGCGATCCACTGAAATGGTCTGCACGACAAAAGATTGCAGTCGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTCGAGCCACTAGTCGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGCGACCTAGCAGTAGAAACTAGAATCCTTGGGAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCTGATACATACTCGTTTGGCGTAGTGTTGCTGGAACTCGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCGCGAAACCTGTTGCGGAAAGATGCGATCTCCGAACTAGTCGATCCATGTTTGAGGAACTGTTATTCAGACGAGGAAGTTCACCGAATGCTGCAATGCGCTTCCTTGTGCATCAAGCGCGATCCGTATGTAAGACCGCGCATGTCTCAGGTGCTTCGGGTTTTGGAGGGCGACATCGTTTTGTAA 2016 45.63 MEKGDLDVAGKVVVVAIKATSKEVSKAALVWALTHVVQPGDHIKLLVVIPSHQSSKWMRGFSRLTSDCAIGHLRTPSGTFSDRKDDIVHSCSQMVHQLHGAYDPLKIKVRIKILSGLARGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKINTREPWVSSHELDVSQKCLKSYFDESIMFRAPDVTPDSTPDVESPLTVTDIGTSSISSSDVGSSSLFSGICGSLRNESRTAADGGRNMSGSEYDSESEKQTPSVSYFQRCMVDIISSRRKFQQRAMEESQNAHHRPPAPTRQGLVKKMPNLSLEPSTDVAHCNTEISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGVLSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKDAISELVDPCLRNCYSDEEVHRMLQCASLCIKRDPYVRPRMSQVLRVLEGDIVL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30937058 30940887 - CcPI632755_03g016250.1 Cco03g1625 174984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1625 671 Gene3D Transferase(Phosphotransferase) domain 1 471 669 - -
Cco03g1625 671 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1625 671 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1625 671 CDD STKc_IRAK 401 667 - -
Cco03g1625 671 SUPERFAMILY Protein kinase-like (PK-like) 378 663 IPR011009 -
Cco03g1625 671 MobiDBLite consensus disorder prediction 253 276 - -
Cco03g1625 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 367 470 - -
Cco03g1625 671 Pfam Protein tyrosine and serine/threonine kinase 399 664 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1625 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 471 671 - -
Cco03g1625 671 PANTHER OS01G0750732 PROTEIN 168 666 IPR050885 -
Cco03g1625 671 SMART tyrkin_6 395 665 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cco03g1625 671 Gene3D Phosphorylase Kinase; domain 1 366 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1625 Cco-Chr3:30937058 Cco05g2185 Cco-Chr5:30650028 3.30E-144 dispersed
Cco02g1295 Cco-Chr2:24646985 Cco03g1625 Cco-Chr3:30937058 1.20E-64 transposed
Cco03g1625 Cco-Chr3:30937058 Cco07g1440 Cco-Chr7:28506796 1.60E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86693 PF07714 PK_Tyr_Ser-Thr 1.60E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1625 - - - 0.0