Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g1644 | ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCCTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGAAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGTGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCATGTAAGGATGGAACTAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGGTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA | 1149 | 51.78 | MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRGPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31120749 | 31121897 | + | CcPI632755_03g016440.1 | Cco03g1644 | 175003 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g1644 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Cco03g1644 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872(InterPro) | |
| Cco03g1644 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 382 | IPR045234 | - | |
| Cco03g1644 | 382 | FunFam | Zinc finger CCCH domain-containing protein 66 | 92 | 160 | - | - | |
| Cco03g1644 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Cco03g1644 | 382 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
| Cco03g1644 | 382 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
| Cco03g1644 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872(InterPro) | |
| Cco03g1644 | 382 | Gene3D | - | 134 | 198 | - | - | |
| Cco03g1644 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 159 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g2086 | Cco-Chr2:33755065 | Cco03g1644 | Cco-Chr3:31120749 | 2.20E-50 | dispersed | |
| Cco03g1644 | Cco-Chr3:31120749 | Cco05g2009 | Cco-Chr5:29212242 | 6.30E-92 | dispersed | |
| Cco07g0250 | Cco-Chr7:2552897 | Cco03g1644 | Cco-Chr3:31120749 | 1.70E-57 | transposed | |
| Cco07g1779 | Cco-Chr7:31936566 | Cco03g1644 | Cco-Chr3:31120749 | 5.10E-46 | transposed | |
| Cco11g0213 | Cco-Chr11:2060806 | Cco03g1644 | Cco-Chr3:31120749 | 3.60E-127 | wgd | |
| Cco03g1644 | Cco-Chr3:31120749 | Cco08g1862 | Cco-Chr8:29671343 | 2.00E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 58974 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g1644 | - | - | - | 0.0 |