Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1644 ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCCTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGAAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGTGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCATGTAAGGATGGAACTAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTTGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGGTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA 1149 51.78 MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRGPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK 382
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 31120749 31121897 + CcPI632755_03g016440.1 Cco03g1644 175003
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1644 382 SMART c3hfinal6 134 160 IPR000571 GO:0046872(InterPro)
Cco03g1644 382 SMART c3hfinal6 169 192 IPR000571 GO:0046872(InterPro)
Cco03g1644 382 PANTHER UNKEMPT FAMILY MEMBER 51 382 IPR045234 -
Cco03g1644 382 FunFam Zinc finger CCCH domain-containing protein 66 92 160 - -
Cco03g1644 382 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872(InterPro)
Cco03g1644 382 MobiDBLite consensus disorder prediction 197 221 - -
Cco03g1644 382 MobiDBLite consensus disorder prediction 236 257 - -
Cco03g1644 382 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872(InterPro)
Cco03g1644 382 Gene3D - 134 198 - -
Cco03g1644 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2086 Cco-Chr2:33755065 Cco03g1644 Cco-Chr3:31120749 2.20E-50 dispersed
Cco03g1644 Cco-Chr3:31120749 Cco05g2009 Cco-Chr5:29212242 6.30E-92 dispersed
Cco07g0250 Cco-Chr7:2552897 Cco03g1644 Cco-Chr3:31120749 1.70E-57 transposed
Cco07g1779 Cco-Chr7:31936566 Cco03g1644 Cco-Chr3:31120749 5.10E-46 transposed
Cco11g0213 Cco-Chr11:2060806 Cco03g1644 Cco-Chr3:31120749 3.60E-127 wgd
Cco03g1644 Cco-Chr3:31120749 Cco08g1862 Cco-Chr8:29671343 2.00E-66 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58974 PF00642 zf-CCCH 1.70E-06 CL0537 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1644 - - - 0.0