Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1666 ATGGGGAGAGCAACCAGATGGTTCAAGAACTTGTTTGGGATTAAGAGAGACAAAGAACCCACGAGAGAAATTTCCAACGCCGGCATCAACAAGGAAAAAAAACCCGCTTCGAATTTCACCGGCGACGCCGAACTCTGCAACAATCCGGCGACAATACCGCCGAATTTGTCAGCGGCGGAAGCGGCTTGGCTCAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTTGCTGCAGCCACTGCCGCTGCAGCCGACGCCGCAGTTGCTGCAGCACAAGCCGCCGTGGCAGTGGTCCGGCTAACCAGCCACGGGAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCAAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGTAGATTCATAAACGACGAAACAAGACTTGAAATTCGAGCCAGAAAATCAATGGAGAGATTTGATGACATAAAAAGCGAACACACAGCTTCGGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCAATGGAAGAAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTAAGCGACGACCTATTCCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCATGACTCTGACTGGTGCGGCGGCGACGACTGGCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTGAGCTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGTGGGGAGAATTTCTTTAAAGGGTACTTGAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAACGCGAAATTGAGATCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATCGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGCAGTCTTAGTGGAGTTAGAATGCAGAGATCTTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAACTTGCAGAGAAGAATATGA 1278 49.22 MGRATRWFKNLFGIKRDKEPTREISNAGINKEKKPASNFTGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDETRLEIRARKSMERFDDIKSEHTASVHSRRLSASLDNTAFTAMEESPKIVEIDTGRPKSWSRRTNTSASELSDDLFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWCGGDDWRLISTAQSTPRFVSSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFNAKLRSQSAPKQRPELGSKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31295206 31296663 - CcPI632755_03g016660.1 Cco03g1666 175025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1666 425 ProSiteProfiles IQ motif profile. 144 171 - -
Cco03g1666 425 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Cco03g1666 425 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Cco03g1666 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Cco03g1666 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Cco03g1666 425 Pfam Protein of unknown function (DUF4005) 320 388 IPR025064 -
Cco03g1666 425 ProSiteProfiles IQ motif profile. 120 148 - -
Cco03g1666 425 PANTHER IQ-DOMAIN 5-RELATED 6 393 - -
Cco03g1666 425 Gene3D - 118 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1666 Cco-Chr3:31295206 Cco09g0024 Cco-Chr9:209671 3.30E-81 dispersed
Cco03g1666 Cco-Chr3:31295206 Cco07g1412 Cco-Chr7:28256124 3.60E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1666 - - - 0.0