Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1670 ATGACGAAATCTCTTCCTTCTCTTTCTCTTTCTCTTCTCTGTTTTCTGAAACCCATTTCCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCTGTTCCCACCATGCCAATTCCCAGCTCTACCAACAAGAACACTCTGTTTTACTCCGATTGAACCAGTTTTGGCAAAACCAAGCCCCAATCAGCCATTGGCTCTCCTCGAATGCTTCTCATTGTACATGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGTTTTTCTCTAACTACAATTTGAACGGAACCTTCCCCCCTTTCCTTTGCGATCTCAACAATCTCACCCACCTTGATCTTCAGCTCAATTTCATCACCGGTGGCTTTCCCACCACTCTTTACAATTGTTCGAACCTTAATTACCTTGACCTCTCTCAGAATTACTTCGCCGGGCCGATTCCCGATGATGTCGACCGCTTGTCTCGCCTCCAGTTTCTTAATCTCGGCGGGAACAGCTTCTCCGGCGAAATTCCGGTATCTATTTCTCGGTTGTCGGAACTCCGGCACCTTTATCTTTTTGTGAATAAATTCAATGGGACTTACCCATCTGAAATTGGTAACTTGTTGAATCTGGAAGAATTGTTGATGGCTTACAATTCAAATCTACAACCGGCTGAATTGCCTTCCAGTTTCGCGCAATTGAAGAAGTTGACTTATTTATGGATGACAGAGTCGAACGTAATCGGTGAAATTCCTGAATGGATTGGAAATTTGACCGCCCTCGTGAAATTGGATTTGTCGAAGAACAATTTGACTGGGAAAATCCCCGGCAGTTTGTTTACGTTGAAGAATCTCAGTGTCGTTTATCTGTTTCAGAACAATCTATCAGGAGAAATTCCTCAGCGGATTGATTCTAAGAAAATCACCGAATACGACTTATCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGCCATCTACAGGAACTGACGGCTCTGCTTCTGTTTTCAAATCAGTTATATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTATTAACAGACGTCAGATTGTTCGACAACAATTTAAACGGTACACTGCCGCCAGATTTCGGCCGGAATTTGATCCTCGAAGGTTTTCAAGTGAATTCCAATAAGCTCACCGGAAGCTTGCCGGAGCACTTGTGCTCCGGCGGTAAGCTCATAGGAGTGACTGCTCAAGAGAATAATCTTAGTGGGGAGTTACCAAAATCGCTTGGGAATTGCGATAGCTTGATCATTGTCGATGTTCATAAGAACAATTTTTCAGGGGAAATTCCTGCCGGTCTATGGACGGCTCTGAATTTGACTTATGTAGTGATGAACAACAATTCTTTCACAGGTGATTTTCCTCAGAGAGTCTCGAAGAATCTTGCGAGATTGCAAATTAGCAACAACAAATTTTCAGGGGAAATTCCATCGGATTTATCTTCATTTTGGAATTTGACAGAGTTTGAAGCAAGCAATAATCTGTTGACGGGACAAATTCCTGAAGAAGTCACTGCTCTTTCAAAGTTGAACAAGCTTTCGCTTGATGGAAATCAACTCACTGGGGAGCTTCCAAAGAATATCCTTTCATGGAGATCATTGCAGAGTCTTAAACTGAGTCGAAATCGTCTTTCCGGTGAAATACCGGACCAACTTTGCGATTTACCCAACCTTAATGATCTTGATCTCTCGGAGAATCGACTTTCCGGGACGATTCCGACTGAGCTAGGAAAATTGAAACTGAATTTCCTTGACCTCTCTTCAAATTTTCTGTCTGGGACAATCCCATCTGCATTTGAAAATGCAATCTTTGCAAGAAGCTTTTTGAACAATCCAAGTCTTTGTTCGAACAACGCAGTTCTAAATCTCGATGGCTGCAGTTTGAGAACTCAGAATTCGAGAAAGATTTCATCACAGCATCTTGCTCTGATCGTAAGCTTGGGCGTAATAGTATTCATACTCTTTGTAGTTTCTGCTTTGTTCATAATCAAAATCTACAGGAAAACTGGAAATAGAGCAGACGTTGAATGGAAACTGACCTCATTTCAAAGGCTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCGGAGAACAACGTGATTGGGAGCGGTGGATCCGGGAAAGTTTATCGGATCCCGGTGAATAGTTTGGGCGAAACAGTGGCTGTGAAGAAGATATGGAACAACAGAAAGTCAGACCACAAGCTCGAGAAAGAATTCATGGCGGAAGTGAAAATCCTCAGTTCGATTCGGCACAACAACATAATCAAACTCCTCTGCTGCGTTTCCTGCGAGACTTCACGGCTTCTCGTTTACGAGTACATGGAGAAGCAAAGCCTCGACAAATGGCTACACAAGAAGAAGAACTCACCGCCGATAATTACAGGGTCGGACCCTATTTGTGGTGTCGCCCTCGATTGGCCAACAAGATTTCAAATTGCAGTAGGGGCAGCACAAGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTGATTCATAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCAGAATTCAATGCCAAAATAGCAGATTTTGGCTTAGCTAAAATGCTCGTAAAGCAAGGGGAATCGGCTTCAGTCTCCGCCGTTGCCGGCTCTTTTGGATACATGGCTCCAGAGTATGCTCAGACACCAAAAATCAACGAGAAGATCGATGTATTTAGCTTTGGAGTCATTCTTCTGGAGTTGGCAACCGGGAAGGAAGCTCTCAACGGCGATGCAGACTCGTCTCTGGTGGAGTGGGCTTGGGAGTATATTCAAGAAGGCAAGGCAATAGACGATGCGTTGGATAAGGATGTGAAGGAGCCAAATTATGTTGATGAAATGTGTAGTGTTTTCAAACTGGGTGTGATCTGCACTTCCACTTTGCCGACCAACCGGCCCACCATGAACCAGGCATTACAAATCTTGATCCGCACTCGGACCTCGGCGCCCCAAACCCATGGAGATAAAAAATAG 3003 44.26 MTKSLPSLSLSLLCFLKPISFFFFFFLLLLCSHHANSQLYQQEHSVLLRLNQFWQNQAPISHWLSSNASHCTWPEIQCTNNSVTALFFSNYNLNGTFPPFLCDLNNLTHLDLQLNFITGGFPTTLYNCSNLNYLDLSQNYFAGPIPDDVDRLSRLQFLNLGGNSFSGEIPVSISRLSELRHLYLFVNKFNGTYPSEIGNLLNLEELLMAYNSNLQPAELPSSFAQLKKLTYLWMTESNVIGEIPEWIGNLTALVKLDLSKNNLTGKIPGSLFTLKNLSVVYLFQNNLSGEIPQRIDSKKITEYDLSENNLTGRIPAAIGHLQELTALLLFSNQLYGEIPESIGRLPLLTDVRLFDNNLNGTLPPDFGRNLILEGFQVNSNKLTGSLPEHLCSGGKLIGVTAQENNLSGELPKSLGNCDSLIIVDVHKNNFSGEIPAGLWTALNLTYVVMNNNSFTGDFPQRVSKNLARLQISNNKFSGEIPSDLSSFWNLTEFEASNNLLTGQIPEEVTALSKLNKLSLDGNQLTGELPKNILSWRSLQSLKLSRNRLSGEIPDQLCDLPNLNDLDLSENRLSGTIPTELGKLKLNFLDLSSNFLSGTIPSAFENAIFARSFLNNPSLCSNNAVLNLDGCSLRTQNSRKISSQHLALIVSLGVIVFILFVVSALFIIKIYRKTGNRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETVAVKKIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMEKQSLDKWLHKKKNSPPIITGSDPICGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKMLVKQGESASVSAVAGSFGYMAPEYAQTPKINEKIDVFSFGVILLELATGKEALNGDADSSLVEWAWEYIQEGKAIDDALDKDVKEPNYVDEMCSVFKLGVICTSTLPTNRPTMNQALQILIRTRTSAPQTHGDKK 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31338810 31341902 - CcPI632755_03g016700.1 Cco03g1670 175029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1670 1000 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 196 296 - -
Cco03g1670 1000 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515(InterPro)
Cco03g1670 1000 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515(InterPro)
Cco03g1670 1000 PRINTS Leucine-rich repeat signature 253 266 - -
Cco03g1670 1000 PRINTS Leucine-rich repeat signature 559 572 - -
Cco03g1670 1000 SUPERFAMILY Protein kinase-like (PK-like) 695 985 IPR011009 -
Cco03g1670 1000 FunFam Receptor-like protein kinase HSL1 680 779 - -
Cco03g1670 1000 Gene3D Phosphorylase Kinase; domain 1 708 780 - -
Cco03g1670 1000 FunFam Kinase family with leucine-rich repeat domain-containing protein 780 1000 - -
Cco03g1670 1000 Gene3D Ribonuclease Inhibitor 192 298 IPR032675 -
Cco03g1670 1000 Gene3D Ribonuclease Inhibitor 40 191 IPR032675 -
Cco03g1670 1000 SMART serkin_6 700 986 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1670 1000 Pfam Protein kinase domain 702 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1670 1000 ProSiteProfiles Protein kinase domain profile. 700 986 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1670 1000 Gene3D Transferase(Phosphotransferase) domain 1 781 999 - -
Cco03g1670 1000 FunFam Receptor-like protein kinase HSL1 isoform A 40 191 - -
Cco03g1670 1000 SMART LRR_typ_2 321 345 IPR003591 -
Cco03g1670 1000 SMART LRR_typ_2 250 274 IPR003591 -
Cco03g1670 1000 SMART LRR_typ_2 511 535 IPR003591 -
Cco03g1670 1000 SMART LRR_typ_2 152 176 IPR003591 -
Cco03g1670 1000 SMART LRR_typ_2 559 583 IPR003591 -
Cco03g1670 1000 Pfam Leucine Rich Repeat 253 273 IPR001611 GO:0005515(InterPro)
Cco03g1670 1000 Pfam Leucine Rich Repeat 465 486 IPR001611 GO:0005515(InterPro)
Cco03g1670 1000 Pfam Leucine Rich Repeat 584 605 IPR001611 GO:0005515(InterPro)
Cco03g1670 1000 FunFam Leucine-rich repeat receptor-like protein kinase TDR 318 632 - -
Cco03g1670 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 986 IPR050647 -
Cco03g1670 1000 SUPERFAMILY RNI-like 267 619 - -
Cco03g1670 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1670 1000 CDD STKc_IRAK 706 987 - -
Cco03g1670 1000 SUPERFAMILY L domain-like 61 387 - -
Cco03g1670 1000 Gene3D Ribonuclease Inhibitor 299 464 IPR032675 -
Cco03g1670 1000 Gene3D Ribonuclease Inhibitor 465 707 IPR032675 -
Cco03g1670 1000 ProSitePatterns Protein kinases ATP-binding region signature. 706 730 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1670 Cco-Chr3:31338810 Cco08g1362 Cco-Chr8:25541053 2.70E-126 dispersed
Cco11g1543 Cco-Chr11:28333246 Cco03g1670 Cco-Chr3:31338810 2.40E-68 dispersed
Cco03g1670 Cco-Chr3:31338810 Cco04g2113 Cco-Chr4:35000119 5.30E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86695 PF00069 Pkinase 2.80E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1670 - - - 0.0