Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1680 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGAAGACGACGACGAAGAGGAGGAGGAATTGAACGACGATCCTTCTCCTTCCACTTCCTCCGCCGGCGCCGTTCCTGTCCCTTCCGTCTCCGCTACCGTCACCGTCGCCACTCCTGCCGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAGCGCCTCGAGACCGCCACCGCCGAGCCTTTGACCTTGCAGGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACCGATGAGGATGAGATCGAGCTTTTGCAGGGGTTTTTGGACTACACGATGCAGCGTGGTACGACTCATCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGCTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGACGACAACGCTTTAGACGATGACGAACCTGCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGAGGAAGCGTACACGGCCTGGATCGGGAATTAGAATGGACGTTCCGCGTTCGTCTAATGAGAATTTGAGTAAAGAGAAAAACAGTACCTACCACAACAACACCAACAACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGCTGAATACTTCCATGGGAGGAGGGCTCTGTGGTGGAGGCAGAGGGTTTAGTGGATTGGCTTTGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTCGGAGGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1194 51.09 MDPRNDAVFPDEDLEDDEESLDDEDDDEEEEELNDDPSPSTSSAGAVPVPSVSATVTVATPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGIRMDVPRSSNENLSKEKNSTYHNNTNNNENVNNVAVAGLIEETVRSCLSPLFKELLNTSMGGGLCGGGRGFSGLALHPIPLSFGGASINFGGGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31463294 31464487 + CcPI632755_03g016800.1 Cco03g1680 175039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1680 397 MobiDBLite consensus disorder prediction 267 291 - -
Cco03g1680 397 MobiDBLite consensus disorder prediction 1 49 - -
Cco03g1680 397 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 108 204 IPR053932 -
Cco03g1680 397 Coils Coil 14 34 - -
Cco03g1680 397 PANTHER BNAANNG10740D PROTEIN-RELATED 15 394 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco03g1680 397 MobiDBLite consensus disorder prediction 9 36 - -
Cco03g1680 397 Coils Coil 158 178 - -
Cco03g1680 397 MobiDBLite consensus disorder prediction 242 291 - -
Cco03g1680 397 Coils Coil 371 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1680 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0168 Cco-Chr2:1666427 Cco03g1680 Cco-Chr3:31463294 6.40E-18 dispersed
Cco02g1763 Cco-Chr2:30411440 Cco03g1680 Cco-Chr3:31463294 1.10E-37 dispersed
Cco03g1680 Cco-Chr3:31463294 Cco04g2018 Cco-Chr4:34273210 1.30E-23 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g1680 . 97 319 GeBP Transcription Factor Family AT3G04930 50.2 3.2e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58977 PF04504 DUF573 1.40E-34 CL0123 Cco TF