Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1687 GTGATCTCTCTTCTTTCTTTGATCCGGGAGGTTTTGTTTAGTACTAGGAGAAGGGATGTTCGTTTCAGGAGTCTTGATCCCTTAGAGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTCCTTTCTACGGATTCGGCAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTCGTGATGGTCAATATGACTGTTGATCCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCTGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGATGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACATCGTGCGTTACTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTGTAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTCTACCGGCAGACACATTTAGTGCGAAGGACACTACTAACTTTAATCCGTACAACCCCAAAGTAAGCAAAATTCCTTCTCTTCGCCACTCCAATGATGTTGGAATTTCTTCTGCAAAACCAACATCAGCACTTGAGGAAGGCAGCAGTCAAAGCTTTGAAGCGGAGGCCACCTCACTGGTGGATGGGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCGTCCAGCTCAGGTACTGGGACTTCTCGATGCAAGGGAGCCCATTTTGGTGAGGGTAATGCTAGACTGAATGTCAATGTAGTTCCATTTTGTCAAAGCTCCGAGGATTCCAAAAATCTTTTTGCGGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTTCTAACAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCGAATATTGGGCATCCTCCTGTACCATTATGGAAAAATCGAGTTGCTTTCAATGCAGTTCCCAATAAAAATGAGTACGATTATATGGAGGGTCGTTTTCCAAGAGTTAGTCGCCGACCTAATGATCATAATATGGCATTGTCTTCTTCTTCCAACTCTACTGTCTCTGAAAATGTCAATCCTGGTGGTTCAGGAACATCTACCGACTTGAGTGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTAATATAAACTCACGGCCGACATCTGCAATAATTAAACCTAATATTTTGCCTTTGATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGATGAAAAGGTAGATGCTATTGATGGACGCGATAATTTAATCAGATTTGATAGCCGTAGAAAGTTCACATATGATAGATCTGTTGGGACCAATTTGATATTGAAGGATCCGGGAAGTCCCAGCCTGTTGGTCGATCCAAGTTCGAATAGGTTTGAGCAAGTTTATGACGATGTGGATGTAGGTCAATGTGAAATCCAATGGGAGGACCTCATTATTGGTGAAAGGATTGGACTAGGTTCGTATGGAGAAGTCTACCATGCTGATTGGAATGGCACAGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGGCAGCTGCGTCATCCGAATATTGTTCTCTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGCCCACATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTACTCCAACAATTGTTCACCGAGATCTGAAATCGCCAAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTGTCAGATTTTGGGTTGTCACGCCTGAAGCACAATACGTTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTCCTTCGGAACGAGCCTTCGAATGAGAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCAGTAGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGCCCCTCATTCTCACAATTAGCCAATATTCTGAAGCCACTGCAGCGGCTTGTCCTGCCACCACATTCAGACCAGCCAAGTTCGTCGGTGCTGCAAGAGATTTCTTCTGCCTACTATTGGTTTGCCGTCGAAAATGAGACTTTGTTTGCCTCTTTCACCCTTTTACCCTCCAATAAAGAATGTGAATTGAATGGCACTTTTCGTTTCCAATTTGACCCTTTCGAGTGCAACAATTTTGCATTAGGAAAATCCCATTTCTCCTGA 2634 43.28 VISLLSLIREVLFSTRRRDVRFRSLDPLEEYNLLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIVKLEDEREFLVDLMAAPGTLLPADTFSAKDTTNFNPYNPKVSKIPSLRHSNDVGISSAKPTSALEEGSSQSFEAEATSLVDGKLSYGRTESVPSSSGTGTSRCKGAHFGEGNARLNVNVVPFCQSSEDSKNLFADLNPFQIKGTGKSFISNKSSDNKIEELQKPNIGHPPVPLWKNRVAFNAVPNKNEYDYMEGRFPRVSRRPNDHNMALSSSSNSTVSENVNPGGSGTSTDLSVSIRSAEVGSSSSNINSRPTSAIIKPNILPLIDEQNRKSNGEHSGNTDMEDEKVDAIDGRDNLIRFDSRRKFTYDRSVGTNLILKDPGSPSLLVDPSSNRFEQVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPTVARIIWECWQTDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISSAYYWFAVENETLFASFTLLPSNKECELNGTFRFQFDPFECNNFALGKSHFS 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31590112 31601608 + CcPI632755_03g016870.1 Cco03g1687 175046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1687 877 MobiDBLite consensus disorder prediction 395 428 - -
Cco03g1687 877 CDD STKc_MAP3K-like 555 801 - -
Cco03g1687 877 Pfam Protein tyrosine and serine/threonine kinase 551 800 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 SUPERFAMILY Protein kinase-like (PK-like) 540 829 IPR011009 -
Cco03g1687 877 FunFam Serine/threonine-protein kinase isoform 1 540 627 - -
Cco03g1687 877 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524(InterPro)
Cco03g1687 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 MobiDBLite consensus disorder prediction 400 428 - -
Cco03g1687 877 PRINTS Tyrosine kinase catalytic domain signature 623 636 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 PRINTS Tyrosine kinase catalytic domain signature 772 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 PRINTS Tyrosine kinase catalytic domain signature 728 750 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 PRINTS Tyrosine kinase catalytic domain signature 662 680 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 PRINTS Tyrosine kinase catalytic domain signature 709 719 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 FunFam PAS domain-containing protein tyrosine kinase family protein 627 814 - -
Cco03g1687 877 PANTHER SERINE-THREONINE PROTEIN KINASE 35 802 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco03g1687 877 Gene3D Transferase(Phosphotransferase) domain 1 628 809 - -
Cco03g1687 877 Gene3D Phosphorylase Kinase; domain 1 542 626 - -
Cco03g1687 877 SMART serkin_6 549 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 ProSiteProfiles Protein kinase domain profile. 549 805 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1687 877 Pfam Ethylene-responsive protein kinase Le-CTR1 30 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1907 Cco-Chr2:31947509 Cco03g1687 Cco-Chr3:31590112 6.00E-71 dispersed
Cco03g1687 Cco-Chr3:31590112 Cco04g1190 Cco-Chr4:27334546 1.80E-118 dispersed
Cco03g1687 Cco-Chr3:31590112 Cco05g2022 Cco-Chr5:29324219 1.40E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86696 PF07714 PK_Tyr_Ser-Thr 6.80E-63 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1687 - - - 0.0