Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1698 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGTGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACAATAATAATACCACTAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCATAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATCGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGCGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGTAGCCAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATTATGCCTATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAG 951 48.79 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTTNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31721835 31729037 - CcPI632755_03g016980.1 Cco03g1698 175057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1698 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Cco03g1698 316 Pfam Helix-loop-helix DNA-binding domain 166 211 IPR011598 GO:0046983(InterPro)
Cco03g1698 316 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 81 295 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco03g1698 316 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Cco03g1698 316 MobiDBLite consensus disorder prediction 140 165 - -
Cco03g1698 316 Gene3D - 154 211 IPR036638 GO:0046983(InterPro)
Cco03g1698 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 220 IPR036638 GO:0046983(InterPro)
Cco03g1698 316 MobiDBLite consensus disorder prediction 76 98 - -
Cco03g1698 316 FunFam Basic helix-loop-helix transcription factor 156 218 - -
Cco03g1698 316 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1698 Cco-Chr3:31721835 Cco09g0721 Cco-Chr9:6541372 2.90E-74 dispersed
Cco03g1698 Cco-Chr3:31721835 Cco02g1832 Cco-Chr2:31226410 3.40E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58979 PF00010 HLH 6.90E-08 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1698 - - - 0.0