Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1703 ATGCCGCCTTTCCTTCATTTGCCTTGTTCCCCTCTCAAAAGGTTCATTTCACACACCTCAAAATCCTCCATAAACAATGCCCTGTTCAACCCACAACCCAATCTTCAACCATTTTTCTCATTTCTCCAAGAATTTCCCCATAACATTTTGTCGGTCAAATCCATACACGCCCAGATTATTATCACAAACGCCATATCTGGGGACCAAATTTTGGTTGCAAAGCTTGTTCAGGCGTACTCAGGCTTGGGTTGTTTGGAAAATGCACGGAAAGTGTTTGATAAATTTCCTCAACCAAAAACTCTTCTTTGCAATGCCATGGTTAATGGGTATCTGCAAAATGAGCATTATAATGACAGTATCGAGCTGCTTAAGATGATGAGTCGATGTGATTTGGAATTTGATAGTTATACTTGTAATTTTGCTCTTAAGGCATGCATGTCCTCATTGGATTATGAAATGGGGATGGAAGTGATTAGATTAGCTGTGTGTAAGGGGTTGGCTAGAGGTCGGTTTTTGGGAAGTTCTATTTTGAATTTTTTGGTGAAAACTGGTGATATTATGAGTGCACAATTTTTTTTTCATCAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAAGAAGGCTTGTTTAGTGAAGGTTATAATGTGTTCCTTGATATGCTTTATAATAAAATTGAGCCCAGTGCTGTGACCATGACAATCTTGATTCAATCCTGTGGGGAGATGAGGAATTTAAAGTTTGGAAAATGTATACATAGCTATGTTCTTGGATTTGGAATGAGTAGTGATACAAGGGTGCTTACCTCATTGATTGATATGTATTGTAAATCGGGTGACGTCGAAAGTGCTCGATGGATTTTCGATACGATGCCCTTGAGGAACTTGGTCTCTTGGAATGTTATGATTTCGGGATATGTTCAAAATGGTTTTCTTGTTGAAACTTTATATCTCTTTCGGATGTTGGTTATGAATGATGGAGGTTTCGATTCAGGTACTGCTGTTAGCCTCATCCAGCTGTGTTCTCGCACGGCTGATTTGGATGGCGGCAAGATTCTTCATGGTTGCATCTATCGAAGGGGACTTGATTTGAATTTGGTTTTGTCTACTGCAATTGTTGATCTATATGCTAAATGTGGATCCCTGGCCTATGCATCTTCTGTTTTTGAAAGAATGAAAAATAAGAATGTGATTTCATGGACTGCCATGCTTGTGGGACTGGCACAGAATGGGCATGCTAGAGATGCCTTAAAGTTATTTTATCAGATGCAAAATGAGAGAGTTACTTTCAATGCCCTCACCTTAGTTAGTTTAGTCCAATGTTGCGCGCTCCTAGGCTTGTTACGTGAAGGGAGATGTGTGCATGCTATCTTAACTCGATTTCATTTTGCTTCCGAAGTTGTCGTTATAACAGCCCTCATTGACATGTATGCAAAATGCAGCAAAATAAACTCAGCTGAGAAGGTATTCAAGTATGGTTTTACGCCTAAGGATGTGATATTATATAACGCTATGATTTCGGGCTATGGAATGCACGGTCTTGGGCGTAAAGCACTGTGCGTCTACCATCAAATGAATCTAGAAGGACTTCAGCCAAACGAGAGTACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTGGTGGAAGAGGGGATCTCTTTGTTTCAAAATATGGAGAAAGATCATGACGTAACACCTACCGATAAACTTTACGCTTGTTTTGTAGATCTTCTATGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAATTAATCAATCAAATGCCTTTCATACCAACCAGTGGCATACTTGAAACTCTGCTGAATGGATGTCTTTTGCACAAGGACATTGAATTAGGTGTAAAATTTGCTGACAGATTACTCTCCTTGGAGTCTAGAAATCCAAGCATCTACATTACCTTGTCAAATATTTATGCCGAAGCAAGTCGATGGGATTCGGTAAAGTATGTTCGAGATCTTCGCTCTTCCTATTGGCTCTTTCCACTTACTCGCAGACAGCCCAACAGAGCCCACAACAACCACGACACTCAACTGCAAACAATCCACAATTATGATGATCCCAATTTCCCTGTTCTGCTTTCCGGTCGATCGTTTTCTTTGATGGGGTTTTCATGTTTCTTTGTTCTTGTGAGAAAACCTATGAGTGAAGTGCTTCTCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATCTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTCCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGGCCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGGGTAGGTGTAGACCTCTGGAGTGCTGGATGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAACGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGACATCAATCTTCCTCTACTATATCTACCAGTCAGACTGA 3429 41.73 MPPFLHLPCSPLKRFISHTSKSSINNALFNPQPNLQPFFSFLQEFPHNILSVKSIHAQIIITNAISGDQILVAKLVQAYSGLGCLENARKVFDKFPQPKTLLCNAMVNGYLQNEHYNDSIELLKMMSRCDLEFDSYTCNFALKACMSSLDYEMGMEVIRLAVCKGLARGRFLGSSILNFLVKTGDIMSAQFFFHQMVEKDVVCWNVMIGGFMQEGLFSEGYNVFLDMLYNKIEPSAVTMTILIQSCGEMRNLKFGKCIHSYVLGFGMSSDTRVLTSLIDMYCKSGDVESARWIFDTMPLRNLVSWNVMISGYVQNGFLVETLYLFRMLVMNDGGFDSGTAVSLIQLCSRTADLDGGKILHGCIYRRGLDLNLVLSTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFYQMQNERVTFNALTLVSLVQCCALLGLLREGRCVHAILTRFHFASEVVVITALIDMYAKCSKINSAEKVFKYGFTPKDVILYNAMISGYGMHGLGRKALCVYHQMNLEGLQPNESTFVSLLSACSHSGLVEEGISLFQNMEKDHDVTPTDKLYACFVDLLCRAGRLRQAEELINQMPFIPTSGILETLLNGCLLHKDIELGVKFADRLLSLESRNPSIYITLSNIYAEASRWDSVKYVRDLRSSYWLFPLTRRQPNRAHNNHDTQLQTIHNYDDPNFPVLLSGRSFSLMGFSCFFVLVRKPMSEVLLREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSETSIFLYYIYQSD 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31767472 31776320 + CcPI632755_03g017030.1 Cco03g1703 175062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1703 1142 Gene3D Transferase(Phosphotransferase) domain 1 931 1133 - -
Cco03g1703 1142 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 474 671 - -
Cco03g1703 1142 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 254 352 - -
Cco03g1703 1142 FunFam probable serine/threonine-protein kinase At1g54610 835 930 - -
Cco03g1703 1142 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1703 1142 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 213 327 IPR050421 -
Cco03g1703 1142 NCBIfam pentatricopeptide repeat 404 435 IPR002885 -
Cco03g1703 1142 NCBIfam pentatricopeptide repeat 542 575 IPR002885 -
Cco03g1703 1142 NCBIfam pentatricopeptide repeat 103 134 IPR002885 -
Cco03g1703 1142 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Cco03g1703 1142 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Cco03g1703 1142 NCBIfam pentatricopeptide repeat 303 329 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat 275 300 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat 477 497 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat 581 602 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat 303 329 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat 103 130 IPR002885 -
Cco03g1703 1142 Coils Coil 768 795 - -
Cco03g1703 1142 Pfam PPR repeat family 401 449 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat family 503 551 IPR002885 -
Cco03g1703 1142 Pfam PPR repeat family 199 246 IPR002885 -
Cco03g1703 1142 MobiDBLite consensus disorder prediction 740 800 - -
Cco03g1703 1142 MobiDBLite consensus disorder prediction 735 820 - -
Cco03g1703 1142 Pfam Protein kinase domain 848 1130 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1703 1142 CDD STKc_CDK9_like 848 1130 - -
Cco03g1703 1142 Gene3D Tetratricopeptide repeat domain 260 356 IPR011990 GO:0005515(InterPro)
Cco03g1703 1142 Gene3D Tetratricopeptide repeat domain 454 556 IPR011990 GO:0005515(InterPro)
Cco03g1703 1142 Gene3D Tetratricopeptide repeat domain 169 259 IPR011990 GO:0005515(InterPro)
Cco03g1703 1142 Gene3D Tetratricopeptide repeat domain 51 168 IPR011990 GO:0005515(InterPro)
Cco03g1703 1142 Gene3D Tetratricopeptide repeat domain 357 453 IPR011990 GO:0005515(InterPro)
Cco03g1703 1142 SUPERFAMILY Protein kinase-like (PK-like) 843 1129 IPR011009 -
Cco03g1703 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Cco03g1703 1142 ProSiteProfiles Protein kinase domain profile. 848 1135 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1703 1142 Pfam E motif 621 666 IPR046848 -
Cco03g1703 1142 FunFam Pentatricopeptide repeat-containing protein mitochondrial 354 459 - -
Cco03g1703 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cco03g1703 1142 ProSitePatterns Protein kinases ATP-binding region signature. 854 877 IPR017441 GO:0005524(InterPro)
Cco03g1703 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Cco03g1703 1142 Gene3D Phosphorylase Kinase; domain 1 835 930 - -
Cco03g1703 1142 Gene3D Tetratricopeptide repeat domain 557 687 IPR011990 GO:0005515(InterPro)
Cco03g1703 1142 FunFam probable serine/threonine-protein kinase At1g54610 931 1138 - -
Cco03g1703 1142 SMART serkin_6 848 1134 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1703 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cco03g1703 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 569 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1703 Cco-Chr3:31767472 Cco05g0679 Cco-Chr5:5590154 2.50E-168 dispersed
Cco11g1440 Cco-Chr11:27176003 Cco03g1703 Cco-Chr3:31767472 1.50E-56 dispersed
Cco11g1957 Cco-Chr11:32088666 Cco03g1703 Cco-Chr3:31767472 1.50E-46 dispersed
Cco03g1703 Cco-Chr3:31767472 Cco02g1754 Cco-Chr2:30303719 6.80E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86697 PF00069 Pkinase 1.90E-66 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1703 - - - 0.0