Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g1707 | ATGACACCCATTTTGAGTTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTGTTGATTGGTCTGTTTACTGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTTATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCATTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAATCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAAGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAATGTTGATGCAAGAGTTGCTATACATTTTATTGGGAGCTTCTTTTATCTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGCATTGTAATGTCACATTATACCTGGCATAACGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTTTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTATTAGGCCTGGTCATGGTTGGAAGAGCTGCCTTTGTTTTTCCATTATCATTTATATCAAATTTAGCTAAAAAATCGGCAGGCGAGAAAATAACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTTTCTATTGCTCTAGCTTATCATCAGTTCACCCGAGCTGGGCACACTCAACTACGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTCTTCAGCACAATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGCTACCTCAACTAAAACACACCAACAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGATTCGGAGCTGGATCTTGACAGTCTCCACGTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCAACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCCGTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTTCCCTTTGTTCCAGGATCCCCAACCGAAAGGGATAAGGGTGGGCGGTGTGAGTATCGCATGTTTGCCGGGAATGGGCATGGAGCAGAGCAGTCGGAATGTGTTGATTCTCTCTTGCCTTCTGTTTGCTGCCCTCTTATTTTTGGTACAAATCATTATGGGATGTCTCGAGATGGAACACAAAGCTTATTGGGCAATGGAAAGGTGCAACATGAACAGAGCAAAGACAAGGGAGTCGAGGCTACTTTAATTGCAACAATTACAAGAATGGTCCATCGACCGTCTCAATCAAAGCTAAGCTTCCTAGACAGATGGTCAAATTTGGAAAAGAATAGGAATCAGCCTGGACCGTTTGGAATGGCAGACTAA | 1938 | 42.83 | MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCFIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSNVDARVAIHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSAGEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLLPQLKHTNSMLSDPATPKSFSVPLLGSAQDSELDLDSLHVPRPSSIRALLATPTHTVHRYWRKFDDAVMRPMFGGRGFVPFVPGSPTERDKGGRCEYRMFAGNGHGAEQSECVDSLLPSVCCPLIFGTNHYGMSRDGTQSLLGNGKVQHEQSKDKGVEATLIATITRMVHRPSQSKLSFLDRWSNLEKNRNQPGPFGMAD | 645 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31815096 | 31823150 | + | CcPI632755_03g017070.1 | Cco03g1707 | 175066 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g1707 | 645 | Gene3D | - | 145 | 197 | - | - | |
| Cco03g1707 | 645 | NCBIfam | sodium/hydrogen exchanger 3 | 24 | 446 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco03g1707 | 645 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco03g1707 | 645 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco03g1707 | 645 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco03g1707 | 645 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco03g1707 | 645 | Pfam | Sodium/hydrogen exchanger family | 32 | 443 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cco03g1707 | 645 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 537 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1231 | Cco-Chr1:18878351 | Cco03g1707 | Cco-Chr3:31815096 | 1.50E-32 | dispersed | |
| Cco03g1707 | Cco-Chr3:31815096 | Cco09g0610 | Cco-Chr9:5387198 | 3.10E-200 | dispersed | |
| Cco03g1707 | Cco-Chr3:31815096 | Cco06g0554 | Cco-Chr6:5972658 | 1.50E-218 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g1707 | - | - | - | 0.0 |