Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1707 ATGACACCCATTTTGAGTTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTGTTGATTGGTCTGTTTACTGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTTATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCATTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAATCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAAGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAATGTTGATGCAAGAGTTGCTATACATTTTATTGGGAGCTTCTTTTATCTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGCATTGTAATGTCACATTATACCTGGCATAACGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTTTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTATTAGGCCTGGTCATGGTTGGAAGAGCTGCCTTTGTTTTTCCATTATCATTTATATCAAATTTAGCTAAAAAATCGGCAGGCGAGAAAATAACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTTTCTATTGCTCTAGCTTATCATCAGTTCACCCGAGCTGGGCACACTCAACTACGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTCTTCAGCACAATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGCTACCTCAACTAAAACACACCAACAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGATTCGGAGCTGGATCTTGACAGTCTCCACGTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCAACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCCGTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTTCCCTTTGTTCCAGGATCCCCAACCGAAAGGGATAAGGGTGGGCGGTGTGAGTATCGCATGTTTGCCGGGAATGGGCATGGAGCAGAGCAGTCGGAATGTGTTGATTCTCTCTTGCCTTCTGTTTGCTGCCCTCTTATTTTTGGTACAAATCATTATGGGATGTCTCGAGATGGAACACAAAGCTTATTGGGCAATGGAAAGGTGCAACATGAACAGAGCAAAGACAAGGGAGTCGAGGCTACTTTAATTGCAACAATTACAAGAATGGTCCATCGACCGTCTCAATCAAAGCTAAGCTTCCTAGACAGATGGTCAAATTTGGAAAAGAATAGGAATCAGCCTGGACCGTTTGGAATGGCAGACTAA 1938 42.83 MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCFIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSNVDARVAIHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSAGEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLLPQLKHTNSMLSDPATPKSFSVPLLGSAQDSELDLDSLHVPRPSSIRALLATPTHTVHRYWRKFDDAVMRPMFGGRGFVPFVPGSPTERDKGGRCEYRMFAGNGHGAEQSECVDSLLPSVCCPLIFGTNHYGMSRDGTQSLLGNGKVQHEQSKDKGVEATLIATITRMVHRPSQSKLSFLDRWSNLEKNRNQPGPFGMAD 645
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 31815096 31823150 + CcPI632755_03g017070.1 Cco03g1707 175066
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1707 645 Gene3D - 145 197 - -
Cco03g1707 645 NCBIfam sodium/hydrogen exchanger 3 24 446 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g1707 645 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g1707 645 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g1707 645 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g1707 645 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g1707 645 Pfam Sodium/hydrogen exchanger family 32 443 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco03g1707 645 PANTHER SODIUM/HYDROGEN EXCHANGER 17 537 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1231 Cco-Chr1:18878351 Cco03g1707 Cco-Chr3:31815096 1.50E-32 dispersed
Cco03g1707 Cco-Chr3:31815096 Cco09g0610 Cco-Chr9:5387198 3.10E-200 dispersed
Cco03g1707 Cco-Chr3:31815096 Cco06g0554 Cco-Chr6:5972658 1.50E-218 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1707 - - - 0.0