Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1745 ATGGATGTTACCAACAATTCAAGAGCACCACCACCACCACCAAAAAACCACTTCCATAACCACAACAATTCCAAATTCCACCAACATTACCACAACCACAATGCCATTCTCAGCTCAAATTCCTTCCTCATTATCATTGCCTCAATCATCTCCATCACCATTCTCCTTGCCATCTTCTTCCTCATCTTCATGCTTCTCCGCCTCAAATCCGCTCGAAACACCGCCACTGCCGCCGCCTCCACCGCCGCACAATCCACCACATTCATCCCTCACACAACCATCAATTTTGACTCAAGCCCAGAAGTGAAGGGGGGTGGGTGCTTATATGGAGGCAATTCTGGGAGAATTCCTCAGTATAGAATCAGGGGAGTTCAAGTTTTCACTTATAAGGAACTGGAATTGGCTACTGACAATTTTAGTGAAGCAAATGTGATTGGAAAGGGAAGATTAGGGTTTGTGTACAGAGGAGTTCTTGCAGATGGAGCTGTGGTTGCCATTAAAATGCTTCACAGAGATGGCAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTAGATCTCCTAAGCTGCTTGCACTCTCCTTGTTTGGTGGAGTTGCTTGGCTACTGTGCTGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTACATAAACCCAACAGTGAATCTCGGCCATTGGATTGGAAAACTAGATTGAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATTCATAGAAACTTCAAGTGCACCAATGTTCTACTGGATCAGGATTTCCGAGCCAAGGTGTCGGATTTTGGTTCGGCCAAGATGGGCTCTGACAAGATCAATGGTCAGATATCTACACAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACAGGAAAACTTACAACAAAGTCAGATGTGTACAGCTATGGTGTTGTGCTGCTTGAGCTATTGACCGGTCGAGTGCCGGTCGATATCAAACGGCCGCAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTGACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGGAAGTACTCAAAAAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCTGAAGCCGACTACCGGCCTTTGATGACCGACGTTGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCATCATCGTCATCTCGATTCTTCAATTGA 1284 46.11 MDVTNNSRAPPPPPKNHFHNHNNSKFHQHYHNHNAILSSNSFLIIIASIISITILLAIFFLIFMLLRLKSARNTATAAASTAAQSTTFIPHTTINFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDNFSEANVIGKGRLGFVYRGVLADGAVVAIKMLHRDGKQRERAFRMEVDLLSCLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHKPNSESRPLDWKTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRFFN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32165403 32168459 - CcPI632755_03g017450.1 Cco03g1745 175104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1745 427 Gene3D Transferase(Phosphotransferase) domain 1 215 424 - -
Cco03g1745 427 MobiDBLite consensus disorder prediction 1 24 - -
Cco03g1745 427 SUPERFAMILY Protein kinase-like (PK-like) 117 412 IPR011009 -
Cco03g1745 427 ProSiteProfiles Protein kinase domain profile. 139 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g1745 427 PANTHER OS01G0750732 PROTEIN 9 417 IPR050885 -
Cco03g1745 427 FunFam Somatic embryogenesis receptor kinase 1 112 214 - -
Cco03g1745 427 Pfam Protein tyrosine and serine/threonine kinase 143 412 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g1745 427 CDD STKc_IRAK 145 415 - -
Cco03g1745 427 FunFam Receptor-like serine/threonine-protein kinase ALE2 215 426 - -
Cco03g1745 427 Gene3D Phosphorylase Kinase; domain 1 112 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1745 Cco-Chr3:32165403 Cco07g0266 Cco-Chr7:2710180 2.50E-113 dispersed
Cco03g1738 Cco-Chr3:32087662 Cco03g1745 Cco-Chr3:32165403 2.00E-25 proximal
Cco04g1094 Cco-Chr4:26376843 Cco03g1745 Cco-Chr3:32165403 7.50E-49 transposed
Cco03g1745 Cco-Chr3:32165403 Cco05g0690 Cco-Chr5:5660093 2.80E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86701 PF07714 PK_Tyr_Ser-Thr 6.80E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1745 - - - 0.0