Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1752 ATGGCATTCTCTATCTCCTTCCTCAAATCCTCCGCTCTCTTTCTCACCATTCTCTCTGTTTTCATCTTCTTCATCCTCTTCACTCCCAATCGCTCGCCGGAATCCGCATCCAGAAGGTCCCTCATTGCTGCCGGCGATTTCAATTCCAGTGTCCCTTCGATCCCATCTTGTTCCTCTGTTGAATCTCACTCCGATGGCCTCGTTAACTACTTGTATTTCCACTTCTGCTTCTTTGATCAAAACCCATCTCTCTCTGTCCCTTTTCTCATTCTCTTTCTTCTCCTCCACTTCTACATCCTCATCAAAACTGCTCAAGATCACTTCTCCATTGTCACTTCCAAGCTTGCCTTTCACCTCAACTTGTCCCCGAGTATGGCCGCCGTGACGCTCTTGGCTTTGGGCAATGGCGCCCCGGATGTGTTTGCATCTGTTGCCGCGGTTCGTGGTGGTCAGTATCGAACTGGGTTCGGTGCAATTCTCTCTGCGGGCACGTTTGTTTCCGCTTTTGTGGTTGGATTTGTGGCCATTTATGCTGCTCCGTTTTCGGTGAATCCGGCTCAGTTTGTGAGGGATGTGCTGTTCTATTTGACTGCAGCATTGTTCTTGTTCTATGTGTATCTTAGTGCAGAGATTTTCTTGTGGCAAGCTGTTGGGTTTGTTGGGTTCTATCTGTTCTTTGTTGGATTGGTGTTTTGGATGGATTTGAGAATGGATAGTGGGAAAGTTAAGAGTGGGGCTGATATGGGAGTGACTAGAGAAGCTGAAATCTACCATGGTGAGTTGCCTCAAGACTGTGAGATTGGAGAAAGCTACAGAACTGTGGATGAAGGAAAAACCAATTCTGGCTTTTGGGAAGCTCTTCGAATGATCCCAAAAGCATGGGAAGCTCCTGTCTCGTTTCTTCTGAAGCTCACCATTCCCCAACCTGCACCTTCCCAATGGAGCAGATTCTTTACATCCGCGAATATTTCTCTTTGTCCCATTGCTCTTCTATATGCCTGTAACTCATTCATGTCGTTTAACCATCCCATTGCTTTCCTCTTACCGAATACACATTTACCTCTTTGGTTCGTAGTATTCTTAGCAAGCTCCTCTCTTGCAGTTCTGCACTTTGTCATGGAAACTGAACCCCCAAAAACTGAGCAAGTCCCTACGGTGCTTGCAGCATTTGTGATGAGTGTATTTTGGATTTCGACCATGGCTGGGGAACTTCTGAACTGTCTTGCAGCTCTTGGGGTGCTTCTCAAACTCCCAGCAGCTCTACTTGGGCTTACTGTGCTTGCCTGGGGAAATTCAGTTGGGGATCTTGTGGCTGATGTTGCTCTTGCAAAAGCAGGCCAGCCCTTGCTTGCTATGGCTGGATGCTTTGCAGGGCCAATGTTTAACATGCTTGTGGGGCTTGGTACAGCTTTAGTTATACAAACAGCTAACAGTTATCCGGAGGCGTATCAGCTTCAATTTCATATCGGAATCGTGATTGCATTCGTATTCCTACTTTTCAGCCTGATGGGCTCCCTACTAGTAATTATTTGGTACAGATTTCGGGTGCCTCGGTTTTGGGGATTCTGCCTTGTGCTGCTATACATTGTTTTCATGGCTGCCAGTTTACTGATGGCCAAATTTTCTTCATGA 1632 46.69 MAFSISFLKSSALFLTILSVFIFFILFTPNRSPESASRRSLIAAGDFNSSVPSIPSCSSVESHSDGLVNYLYFHFCFFDQNPSLSVPFLILFLLLHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAALFLFYVYLSAEIFLWQAVGFVGFYLFFVGLVFWMDLRMDSGKVKSGADMGVTREAEIYHGELPQDCEIGESYRTVDEGKTNSGFWEALRMIPKAWEAPVSFLLKLTIPQPAPSQWSRFFTSANISLCPIALLYACNSFMSFNHPIAFLLPNTHLPLWFVVFLASSSLAVLHFVMETEPPKTEQVPTVLAAFVMSVFWISTMAGELLNCLAALGVLLKLPAALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANSYPEAYQLQFHIGIVIAFVFLLFSLMGSLLVIIWYRFRVPRFWGFCLVLLYIVFMAASLLMAKFSS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32239564 32242878 + CcPI632755_03g017520.1 Cco03g1752 175111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1752 543 Gene3D - 318 536 IPR044880 -
Cco03g1752 543 Gene3D - 121 251 IPR044880 -
Cco03g1752 543 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 56 541 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
Cco03g1752 543 Pfam Sodium/calcium exchanger protein 91 232 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g1752 543 Pfam Sodium/calcium exchanger protein 387 536 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1752 Cco-Chr3:32239564 Cco10g1579 Cco-Chr10:29000475 7.20E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1752 K13754 - csv:101209909 929.472