Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1769 | ATGTCCAAAATCTCAGGGGGTTCTGATGATGGTGGGAGCTTTGTGTCTGATGGTGAGAAATTAGAGAATCAAGTTAGCCATGGAAGCTCTGAATCCCATCAACACCCTCAGCTTAAAGTTCCCAAGAAGAAAAGAAACTTGCCAGGAACACCAGATCCAGACGCGGATGTTGTAGCGTTATCTCCAGAAACTCTTATGGCAACCAATCGATTCGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAACTACACAGACGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAGCGGGAGCGAGACAAAGAGGAGGGTGTATGTGTGCCCAGAACCGTCGTGCGTGCACCACGACCCGGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAGCATTTCAGTAGAAAGCATGGGGAGAAAAAGTGGAAATGTGAGAAATGCTCCAAAAGATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGTGATGCCTTAACAGATGAAAACAACAAATTAGTATCTCATCAAGTAGCAACAACAATGGCTTCCACCGCCATTAATGCGCCTTCCTTTCAACCTCAACCACTTCCTCATCTTCTTTCTCAACCCCCCGTCCTTTCGCCGCCATTAACGCTGCCCCACGACCTTATGCCTATTCCTCCAAAACCCTTAAATCTATCGGCTGGTTCCATGTTTTCATCTTCCATTTGTTCCGCCACCGATGGCCACCACTTTCCCTCCCCCTCTGCCCTCATGTCCGCCACCGCTCTGCTGCAGAAGGCGGCACAGATGGGAGCTGCCGTAAGTAGCCGTGGAAACTCCACTCCTTGTTTGAATTCGCCCATGCTCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCTTTCTGTGGGATATTGGCTACCAACTGTTTGCAAAAATCTCAAGAAGAAAACATTTTGTCTCAACTACCTTCCAAGGGCAAAGCTGTGGACATGGAGATGATCAACGACATTCCGATGCTGAACGGAGTGTTCGATGATCAGCCGGTCGTGGAAGCGGCAAGGAAGACGATGACATTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAATGTGGGGTTTGGAGGGCTTGTGGAGAATATGACTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAGATTTGGGAGATTTGA | 1305 | 47.43 | MSKISGGSDDGGSFVSDGEKLENQVSHGSSESHQHPQLKVPKKKRNLPGTPDPDADVVALSPETLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTDENNKLVSHQVATTMASTAINAPSFQPQPLPHLLSQPPVLSPPLTLPHDLMPIPPKPLNLSAGSMFSSSICSATDGHHFPSPSALMSATALLQKAAQMGAAVSSRGNSTPCLNSPMLHEKKGFVTTMAPSSFCGILATNCLQKSQEENILSQLPSKGKAVDMEMINDIPMLNGVFDDQPVVEAARKTMTLDLLGAEGGKGMKFQAQENVGFGGLVENMTYFRNQGAMGRQIWEI | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32366608 | 32374003 | + | CcPI632755_03g017690.1 | Cco03g1769 | 175128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1769 | 434 | FunFam | protein indeterminate-domain 12-like | 50 | 119 | - | - | |
Cco03g1769 | 434 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Cco03g1769 | 434 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
Cco03g1769 | 434 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 147 | 171 | - | - | |
Cco03g1769 | 434 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 109 | 143 | - | - | |
Cco03g1769 | 434 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Cco03g1769 | 434 | SMART | c2h2final6 | 148 | 168 | IPR013087 | - | |
Cco03g1769 | 434 | SMART | c2h2final6 | 113 | 143 | IPR013087 | - | |
Cco03g1769 | 434 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 126 | 205 | - | - | |
Cco03g1769 | 434 | Pfam | Zinc finger, C2H2 type | 71 | 93 | IPR013087 | - | |
Cco03g1769 | 434 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 176 | IPR013087 | - | |
Cco03g1769 | 434 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Cco03g1769 | 434 | Gene3D | Classic Zinc Finger | 49 | 117 | - | - | |
Cco03g1769 | 434 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 168 | IPR036236 | - | |
Cco03g1769 | 434 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
Cco03g1769 | 434 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 174 | 211 | - | - | |
Cco03g1769 | 434 | Gene3D | Classic Zinc Finger | 127 | 210 | - | - | |
Cco03g1769 | 434 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 28 | 402 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1769 | Cco-Chr3:32366608 | Cco09g0587 | Cco-Chr9:5188438 | 1.70E-88 | dispersed | |
Cco03g1769 | Cco-Chr3:32366608 | Cco04g1089 | Cco-Chr4:26345648 | 5.90E-86 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58985 | PF00096 | zf-C2H2 | 0.0042 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1769 | - | - | - | 0.0 |