Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1769 ATGTCCAAAATCTCAGGGGGTTCTGATGATGGTGGGAGCTTTGTGTCTGATGGTGAGAAATTAGAGAATCAAGTTAGCCATGGAAGCTCTGAATCCCATCAACACCCTCAGCTTAAAGTTCCCAAGAAGAAAAGAAACTTGCCAGGAACACCAGATCCAGACGCGGATGTTGTAGCGTTATCTCCAGAAACTCTTATGGCAACCAATCGATTCGTGTGTGAAATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAACTACACAGACGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAGCGGGAGCGAGACAAAGAGGAGGGTGTATGTGTGCCCAGAACCGTCGTGCGTGCACCACGACCCGGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAGCATTTCAGTAGAAAGCATGGGGAGAAAAAGTGGAAATGTGAGAAATGCTCCAAAAGATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGTGATGCCTTAACAGATGAAAACAACAAATTAGTATCTCATCAAGTAGCAACAACAATGGCTTCCACCGCCATTAATGCGCCTTCCTTTCAACCTCAACCACTTCCTCATCTTCTTTCTCAACCCCCCGTCCTTTCGCCGCCATTAACGCTGCCCCACGACCTTATGCCTATTCCTCCAAAACCCTTAAATCTATCGGCTGGTTCCATGTTTTCATCTTCCATTTGTTCCGCCACCGATGGCCACCACTTTCCCTCCCCCTCTGCCCTCATGTCCGCCACCGCTCTGCTGCAGAAGGCGGCACAGATGGGAGCTGCCGTAAGTAGCCGTGGAAACTCCACTCCTTGTTTGAATTCGCCCATGCTCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCTTTCTGTGGGATATTGGCTACCAACTGTTTGCAAAAATCTCAAGAAGAAAACATTTTGTCTCAACTACCTTCCAAGGGCAAAGCTGTGGACATGGAGATGATCAACGACATTCCGATGCTGAACGGAGTGTTCGATGATCAGCCGGTCGTGGAAGCGGCAAGGAAGACGATGACATTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAATGTGGGGTTTGGAGGGCTTGTGGAGAATATGACTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAGATTTGGGAGATTTGA 1305 47.43 MSKISGGSDDGGSFVSDGEKLENQVSHGSSESHQHPQLKVPKKKRNLPGTPDPDADVVALSPETLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTDENNKLVSHQVATTMASTAINAPSFQPQPLPHLLSQPPVLSPPLTLPHDLMPIPPKPLNLSAGSMFSSSICSATDGHHFPSPSALMSATALLQKAAQMGAAVSSRGNSTPCLNSPMLHEKKGFVTTMAPSSFCGILATNCLQKSQEENILSQLPSKGKAVDMEMINDIPMLNGVFDDQPVVEAARKTMTLDLLGAEGGKGMKFQAQENVGFGGLVENMTYFRNQGAMGRQIWEI 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32366608 32374003 + CcPI632755_03g017690.1 Cco03g1769 175128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1769 434 FunFam protein indeterminate-domain 12-like 50 119 - -
Cco03g1769 434 MobiDBLite consensus disorder prediction 19 35 - -
Cco03g1769 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cco03g1769 434 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
Cco03g1769 434 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
Cco03g1769 434 SMART c2h2final6 71 93 IPR013087 -
Cco03g1769 434 SMART c2h2final6 148 168 IPR013087 -
Cco03g1769 434 SMART c2h2final6 113 143 IPR013087 -
Cco03g1769 434 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Cco03g1769 434 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Cco03g1769 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 176 IPR013087 -
Cco03g1769 434 MobiDBLite consensus disorder prediction 1 56 - -
Cco03g1769 434 Gene3D Classic Zinc Finger 49 117 - -
Cco03g1769 434 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Cco03g1769 434 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cco03g1769 434 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 211 - -
Cco03g1769 434 Gene3D Classic Zinc Finger 127 210 - -
Cco03g1769 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 402 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1769 Cco-Chr3:32366608 Cco09g0587 Cco-Chr9:5188438 1.70E-88 dispersed
Cco03g1769 Cco-Chr3:32366608 Cco04g1089 Cco-Chr4:26345648 5.90E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58985 PF00096 zf-C2H2 0.0042 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1769 - - - 0.0