Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1771 ATGGGTTGTGTTGTGAAGTGCGTTTTCATGATTGTTATCTTCATTTCGATGCCTTTTTCATCGCAGAACTCCCACATTTTGATTGCTAACTCATTGTTGAATACAGCAGAGAGCTTAAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTACTTGGACTCAAGAGTTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCACCTTTGCAGTCGCCATTGCCGTCTCCATCACCAGCCGCCATTGCTCCTTCTCCTGTTCCTATGGCAGCTCATCCAGTGCACATTCATGAACATTCCCACCCTCATCAACTCCGCTTGCACAAGAGCCGACCAGTATACAAACCTAAAAGAAAAGAAGATCCAAAAGAAGGAAGAGTCAGAAAAATTCTTGTCGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTTATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCATGGAGAAGCATTCTGTTAAGAGTGAAAGAGAAGAGAAGACAGCAAGACCAAAATCTGGCCTTGATCTGTTCGATCTCGGTATGCTTGGAATGGATGTAGAAGAACAGACCCATACTTCTGTAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGAAAGGGACCAAGAGACGTTGGATTCAGAATCTGATAATGTAAGTGTTTCTTCAATCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGATGGAACTCATTCCTCACCTGGGGATAGAGTTACTCCTGTTAAATGCTGCTCGTCTGATGATGAGGAATCATTCCATTCTTGTGGTGACTCCATGTCGAATGCTCGCCTTTCAAATGCTTCCGGATCTTCTTCTGCGAATGTGATAACAAATTCTACTTGTTCTGTGCCAACTGTGAACTTATCAAGAAAATTGGAAATACAATGTGATGAATCTAACAAACTATTAACTTCTGACCATTCGCATCTTACCCTTTCTCCTTGTAGTTCAGAACCCAAAATGCAGATGGTTTCCCATTCTGTAGGTTGCCAAAAGAATGTCCCATCTTTATCTCCACCTCCTCCACCGCCACCGCCACCACCACCGCCTCCGCCAGTCACTGATCGCAGTTCATTTTCCTTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCCTCATCTCCTGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATTTGCCATCACCTCAAACTGCTACTAAACCTTCACTACCATCATCTGCTATTCCTCCACCCCCTTCTCCACCTCCAAGTTTGAAAACAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTTGCGGCCAAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTACACCAGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGCTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAACATATACTAGAGGCAAAAAGACTTCAGAACCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGTAGCGGGTTGCGTTTGAGACAACTTGAAGCACTGGTTAAGATGGTACCAACTCAAGAAGAAGAAACCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATTAGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTCGCCTTCCGAAGAATAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAACCATCTCCGGAATTCATTTTCCATACTAGAGGAAGCCTGCAAGGAACTAAGATCCAGCAGACTCTTCCTGAAACTACTAGAAGCCGTGCTAAAAACTGGAAATCGAATGAACGTCGGAACAAGCAGAGGAGGCGCTAGAGCATTTAAACTAGACGCCCTCCTAAAACTCTCCGACGTCAAAGGAACCGACGGCAAAACATCTCTACTCCACTTCGTGGTACAAGAAATAATCCGGTCTGAAGGAATCAGAGTATCGGGTAGCATAATGGGAAAAATCAACCAAAAAAACAAATCAAGAACCATGGAAGAAAGAGAAAACGATTACCGAAGAATGGGGTTAGATCTGGTATCGGGGTTGAGCATGGAACTGCAGAACGTGAAGCGAGCGGCGACGATCGATCTGAAAGTAGTTGGAAGCTCGAGGGGAAATCTGAATGAGGGAATGGGGAAAATGGAGAAACTGGTGGGGAAGGAGTTGAGTGTGGATGAAAGGAGTGGGAATTTCGTGGAAGCCATGAAAGGGTTTGTGGGCTATGTGAAGAAGAGGATGGAGGAAGTGAGGAAGGATGAAGAAAGGGTAATGTCGAGTGTGAGAGAGATTACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGTTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAATGTCTGTAAGAGCTTCAAGATTGGAAGTTGA 2694 42.98 MGCVVKCVFMIVIFISMPFSSQNSHILIANSLLNTAESLNVKELERVSGEDESGGNEPFILERVRALLGLKSLQLGNQSPSDLSPLQSPLPSPSPAAIAPSPVPMAAHPVHIHEHSHPHQLRLHKSRPVYKPKRKEDPKEGRVRKILVAVLVSAGVTIFICSIIAFWVCKKFKSQREESMEKHSVKSEREEKTARPKSGLDLFDLGMLGMDVEEQTHTSVSEKELSVHKEGERDQETLDSESDNVSVSSIKEMMYVHEEDDSKSIQCVSDGTHSSPGDRVTPVKCCSSDDEESFHSCGDSMSNARLSNASGSSSANVITNSTCSVPTVNLSRKLEIQCDESNKLLTSDHSHLTLSPCSSEPKMQMVSHSVGCQKNVPSLSPPPPPPPPPPPPPPVTDRSSFSFSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLPSPQTATKPSLPSSAIPPPPSPPPSLKTNAYSFKTPPPPPSKLPQFMAFGKEGNLRPKLKPLHWDKVRATPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGSGLRLRQLEALVKMVPTQEEETKLLSYEGDIGELGCTEKFVIAILRIPFAFRRIEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEIIRSEGIRVSGSIMGKINQKNKSRTMEERENDYRRMGLDLVSGLSMELQNVKRAATIDLKVVGSSRGNLNEGMGKMEKLVGKELSVDERSGNFVEAMKGFVGYVKKRMEEVRKDEERVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32389381 32392471 - CcPI632755_03g017710.1 Cco03g1771 175130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1771 897 Coils Coil 649 669 - -
Cco03g1771 897 Pfam Formin Homology 2 Domain 493 886 IPR015425 -
Cco03g1771 897 SUPERFAMILY Formin homology 2 domain (FH2 domain) 501 891 - -
Cco03g1771 897 MobiDBLite consensus disorder prediction 86 102 - -
Cco03g1771 897 SMART it6_source 488 895 IPR015425 -
Cco03g1771 897 MobiDBLite consensus disorder prediction 216 244 - -
Cco03g1771 897 MobiDBLite consensus disorder prediction 398 450 - -
Cco03g1771 897 MobiDBLite consensus disorder prediction 79 138 - -
Cco03g1771 897 PANTHER FORMIN-RELATED 66 893 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cco03g1771 897 MobiDBLite consensus disorder prediction 355 376 - -
Cco03g1771 897 MobiDBLite consensus disorder prediction 451 465 - -
Cco03g1771 897 MobiDBLite consensus disorder prediction 355 482 - -
Cco03g1771 897 MobiDBLite consensus disorder prediction 377 397 - -
Cco03g1771 897 ProSiteProfiles Formin homology-2 (FH2) domain profile. 488 897 IPR015425 -
Cco03g1771 897 Gene3D Formin, FH2 domain 487 894 IPR042201 -
Cco03g1771 897 MobiDBLite consensus disorder prediction 216 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1771 Cco-Chr3:32389381 Cco11g0111 Cco-Chr11:1182128 2.10E-106 dispersed
Cco03g1771 Cco-Chr3:32389381 Cco05g1695 Cco-Chr5:24880812 8.70E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1771 K28090 - csv:101208374 1400.19