Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1799 ATGGGTTATAGAGATGATGATTCTCAGAACAAGAAAAGATACGCCATCATCGGTGTCTCGTCCATGTTACTAGTGGCGATGGTGGTGGCGGTGACGGTTGGCATTAACCTAAACCAAGACGAAACGAGCGAACCGGCTACCGGAAACAAAGCCCATGAAATATCTGCTTCAGTGAAAGCCATTAAAGCCATTTGTCAACCTACTGATTATAAACAAGAATGTGTTGCTAGTCTCAAGGCTGCTGGCAATAACTCTTCAGACCCAAAGGAATTGGTTCAAGCTGGCTTCAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAGTCTGTCACCTTGAAAGAGCTCGAGAAAGACCCTAGAACCTCCAAGGCCCTTGCTGGTTGTAAAGAGCTCATGGATTTTGCTGTTGACGAGCTTAAATACTCGATGAACAAGCTCGGCGAGTTTGATATTAGTAAACTCGATGAGATGTTGATCGATATTAAGATCTGGCTCAGTGCTACCATTACTTATCAGGAAACTTGCTTGGATGGGTTCGAGAACACAACCGGAAATGCGGCAGAGAAGATGAAGAAGGCATTGAAGACATCAATGCGGTTGAGCAGCAATGGGTTGGCCATGGTGTCGCAAATTTCGTCCATGTTGACAGAGTTGCAGATTCCAGGGATCAGCCGAAGGCGACTTCTCGAGATTCCGGTTCTTGGGCATGACGATTACCCCGACTGGGCGAACCCCGGGATGCGACGACTCCTAGCTGCCGGGACGAAAGTGAAGCCAAACGTTGTGGTGGCCAAGGATGGAAGTGGTCAGTTCAGGACCATTCAAGAGGCTCTTGACAAAGTTCCAAAGAGGAAGAACAATGCAACCTTTGTGATTCATATCAAGGCAGGAGTGTACAAGGAATATCTCATCATCAAAAAATCTCTCACCCATTTGATGCTCATTGGTGATGGCCCCAAAAAGACCATTATCACTGGAAGTAAAAACTTCATTGATGGCACACCCACCTTCAAAACTGCAACCGTTGCTGTGACAGCAGAACACTTTATGGCAAGAGATATCGGGTTCGAAAACACGGCAGGGCCACATAAGCACCAAGCAGTTGCACTACGAGTCCAAGCCGACAAAGCCGTATTCTACAATTGCGAAATGCATGGCTACCAAGACACTCTCTACGTCCACACCATGCGTCAATTCTACCGCGATTGCACCATCTCTGGCACCATCGACTTCATCTTCGGTGATGCAGCTGCCATCTTCCAGAGTTGCACCTTCCTAGTCCGCAAGCCCCTTCCAAACCAACAATGCATTGTAACGGCACACGGACGTAAAGAACGCCGCCAACCATCCGCCCTCATCATCCAAAACTGTTCGTTCAAGGCCGACACCGACCTCGCCCCAGTACAAAAACAGTTCCGATCCTTCCTTGGGCGACCATGGAAGGAATATTCGAGAACAATCATCATGGAATCATACATTGGTGATTTGATTCAACCAGAAGGGTGGTTGCCATGGGCTGGAGATTGGGGTTTGAAGACATGTTTTTACACCGAGTTCAACAATTATGGGCCAGGATCTGATAAGTCAAAGAGGGTGAAATGGAGAGGGATTAAGACCATTACGCCACAACATGCTTTGGATTTTACTGCCGGAAGGTTTGTTATGGGGGATAGATGGATTAAGCCCACCGGAGTTCCATATGTCTCCGGCATGACCAGGACCGGCGGCGCGGCTGCAACAGGCGGAGCTGCTCATTGA 1761 48.21 MGYRDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGINLNQDETSEPATGNKAHEISASVKAIKAICQPTDYKQECVASLKAAGNNSSDPKELVQAGFKAAMKLIQAAANKSVTLKELEKDPRTSKALAGCKELMDFAVDELKYSMNKLGEFDISKLDEMLIDIKIWLSATITYQETCLDGFENTTGNAAEKMKKALKTSMRLSSNGLAMVSQISSMLTELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGTKVKPNVVVAKDGSGQFRTIQEALDKVPKRKNNATFVIHIKAGVYKEYLIIKKSLTHLMLIGDGPKKTIITGSKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPHKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTISGTIDFIFGDAAAIFQSCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSFKADTDLAPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLKTCFYTEFNNYGPGSDKSKRVKWRGIKTITPQHALDFTAGRFVMGDRWIKPTGVPYVSGMTRTGGAAATGGAAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32636494 32638448 - CcPI632755_03g017990.1 Cco03g1799 175158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1799 586 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
Cco03g1799 586 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Cco03g1799 586 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
Cco03g1799 586 FunFam Pectinesterase 255 572 - -
Cco03g1799 586 NCBIfam pectinesterase inhibitor domain 54 212 IPR006501 GO:0004857(InterPro)
Cco03g1799 586 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Cco03g1799 586 CDD PMEI-like_3 63 214 - -
Cco03g1799 586 FunFam Pectinesterase 57 213 - -
Cco03g1799 586 Pfam Pectinesterase 261 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco03g1799 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Cco03g1799 586 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Cco03g1799 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Cco03g1799 586 Gene3D - 255 572 IPR012334 -
Cco03g1799 586 PANTHER PECTINESTERASE 13 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1799 Cco-Chr3:32636494 Cco11g0021 Cco-Chr11:278329 1.50E-137 dispersed
Cco03g1799 Cco-Chr3:32636494 Cco03g1800 Cco-Chr3:32640561 5.00E-104 tandem
Cco03g1799 Cco-Chr3:32636494 Cco05g0741 Cco-Chr5:6085978 1.20E-198 wgd
Cco03g1799 Cco-Chr3:32636494 Cco06g0497 Cco-Chr6:5453474 4.70E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1799 K01051 - csv:101207393 1079.7