Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1800 ATGTTAAGAGTTTCTTTAGCCATTCATCTTTTTACGTTGATCTTTATTCCCGCATTACAAGTTTCCTGCATTGATGTTATCTACCCGAATGAGCAGAATAATGTTAGACAATCCATGATTTCTCAGATTTGTGCAGATATCGAAGATCGAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAGTCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGTCAGAGCTTGCCTGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAGGCATGGCTGAGCGCTGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCGCGGAATGAAACAATAGATAAAACCAAAAATTCGGAGTTTCCAGATTGGATGATGGATAGTGAGCACAAGCTCGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAGTCGTGGCTTTGGATGGAAGCGGAGATTTCCATTCTATCACAGAAGCTGTAAATGAAACTCCAAATTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAGCGGAAGAAAACCAACATAATGTTTATTGGAGACGGTATTGGAGAAACAATAGTGACGGGAAATCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAAGCAGTGGCACTCCGAGTTGACTCTGATCAATCAGCCTTCTTTCGGTGCAGCTTCGAAGGCCATCAAGACACGCTCTACGTCCACTCCCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTTGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACCAGAGTTCCGCTCCCACTCCAGAAGGTCACGATCACGGCACAAGGTCGAAAATCCCCGCACCAGAGTACAGGGTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAGCCAACATATCTTGGAAGACCATGGAAGTTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAATATAAAAACTATGGACCTGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCTGGGTACCACGATATCCGTGACCCTGCCATGGCTAGGTTCTTCACCTCGGAGCACTTCATCGACGGTCGATCATGGTTGCCAAAGACAGGTATTAAGTTCACATTGGGATTGAGTAATTAA 1626 43.85 MLRVSLAIHLFTLIFIPALQVSCIDVIYPNEQNNVRQSMISQICADIEDRNSCISNIQLEMGRSVNSSPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETIDKTKNSEFPDWMMDSEHKLVKSHPRNVHVDAVVALDGSGDFHSITEAVNETPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDPAMARFFTSEHFIDGRSWLPKTGIKFTLGLSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32640561 32642322 - CcPI632755_03g018000.1 Cco03g1800 175159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1800 541 CDD PMEI-like_3 43 196 - -
Cco03g1800 541 SUPERFAMILY Pectin lyase-like 236 538 IPR011050 -
Cco03g1800 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Cco03g1800 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Cco03g1800 541 Gene3D - 231 539 IPR012334 -
Cco03g1800 541 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
Cco03g1800 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Cco03g1800 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Cco03g1800 541 NCBIfam pectinesterase inhibitor domain 7 195 IPR006501 GO:0004857(InterPro)
Cco03g1800 541 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
Cco03g1800 541 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco03g1800 541 PANTHER PECTINESTERASE 10 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco03g1800 541 FunFam Pectinesterase 231 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1800 Cco-Chr3:32640561 Cco10g0003 Cco-Chr10:107308 4.70E-133 dispersed
Cco03g1799 Cco-Chr3:32636494 Cco03g1800 Cco-Chr3:32640561 5.00E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1800 K01051 - csv:101202977 1051.58