Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1820 ATGGACTCGGATGAAATGAGTCAGACAGAAGTATCAAGGATAAAGCCCCCTCTCGTTCCGCTCGCTACTTTGATCGGTCGCGAGTTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCCGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATCAAACTTGATTGCCAGCGTCTTCCTGGGAACCCTTCCACTGCATTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCCGCCATTTTTGCAAAGGAACATTTATTGGGTAATGTCCTAAGTGCAATTCCTCAAGGGGCTAATCGAGAAAAATGGCTTCAGGCCCTTCCCCGAGCACTAGTTGCTGGTTTTGTTAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACCGTTGCATCTGTGGGAGATTCACGGTGCATACTAGATACCCAAGGAGGTGTAGTTTCTCTATTGACAGTTGATCATAGGTTGGAGGAAAATGAAGAAGAGAGGGAACGAGTAACTGCAAGTGGTGGTGAGGTTGGGAGGCTCAACGTTTTTGGCGGGAATGAGGTTGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGGGATACAGATGTAGGAGAATATATTGTCCCAATACCGCACGTTAAGCAAGTGAAGCTTTCTAATGCTGGTGGAAGGCTAATTATTGCTTCTGATGGTATTTGGGATGCATTATCATCTGAAATGGCTGCAAAGTCGTGTCGAGGTTTACCTGCAGAGCTTGCTGCCAAGCTGGTTGTGAAGGAGGCTTTGCGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATCCCATCCGAGCAACCTATACTATTACCATCAACTCCAAGGAAGAAGCAAAATGTGCTTACCTCATTCTTTGGAAAGAAATATCAAAACTCTTTGGGTAAATCTGCAAACAAACTTTCAGCTGTTGGTGTTGTGGAGGAATTGTTCGAAGAAGGTTCTGCTATGCTTGCTGAAAGGCTAGGCAAAGATTTTCCTTCGGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGTGGATCAACCTCCAAACGAAAATTTGTCGATGAACTCGGGGCCTTTCTTTTCACCGTCGTCAAAGCCATGGGAAGGTCCATTCCTCTGTGCAACTTGTCGAAAAAAGAAAGACGCCATGGAAGGAAAAAGGCCAATAAAACCTACAATAACCGTTTAG 1302 45.01 MDSDEMSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCQRLPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGANREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPSTPRKKQNVLTSFFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDFPSDPNSGIFKCAVCQVDQPPNENLSMNSGPFFSPSSKPWEGPFLCATCRKKKDAMEGKRPIKPTITV 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32850125 32853224 + CcPI632755_03g018200.1 Cco03g1820 175179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1820 433 SMART PP2C_SIG_2 56 302 IPR001932 -
Cco03g1820 433 Gene3D - 43 307 IPR036457 -
Cco03g1820 433 ProSiteProfiles PPM-type phosphatase domain profile. 37 302 IPR001932 -
Cco03g1820 433 Pfam Protein phosphatase 2C 66 285 IPR001932 -
Cco03g1820 433 CDD PP2Cc 48 302 IPR001932 -
Cco03g1820 433 FunFam probable protein phosphatase 2C 5 40 307 - -
Cco03g1820 433 PANTHER PROTEIN PHOSPHATASE 41 301 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco03g1820 433 SUPERFAMILY PP2C-like 48 302 IPR036457 -
Cco03g1820 433 SMART PP2C_4 28 300 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1820 Cco-Chr3:32850125 Cco05g2519 Cco-Chr5:33507876 8.30E-173 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1820 - - - 0.0