Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g1822 | ATGACAGCTCATCGTGCCTTCCAGTTCTGTAAGGTGTATAAAAGAACAACTGAATTTCGCAGATTATGTGAAATTATCCGAAATCATCTTGCTAATCTCAACAAGTACAGAGACCAAAGAGATCGGCCCGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAACTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTATGTCAAATTAACAGAGATCTTCTGGATATCGGATTGGAATCTTTACCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTACAGCTGATAGCTTCATCTGTTGTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCCAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGTGAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAACTCAGGATGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTACTAAACAAAATATCAAAACTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCCACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGTCTATGAAAATTGAGAGTCTATCACAGATGATCCCATTTTTTGACTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTTATTGCCATGAAAGTTGATCATTCAAGGAACGTTGTGCTATTTGGCAATTTGGGTATTGAATCCGATGGGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTGGGAAAGCATCAAAAACAGGTGACATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGCTGCTTGCTCGGAAATTAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAAAAGGTTAAAATTACTGAAGATAAGCGAAGAGGCTGAGCAGAAGCGGCTTGCAGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGAGAAATAGAAGAACGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAGGAAGGGAAGCAGGAAGCCAGTTCTTGACTCTGAAAAGTTGACGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAGAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCATGAAGAGAGAATGATTCACGAACGTGATCAGCAGCTTGAGGTTGAGCTAAGCAAGCAGCGCCACGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATGAATCTTCGCCAAGAGGAGTTCAGCAGACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAGTAATTCAGGCTCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGACAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAAAAAGAGAGAAGAAGCTGAACGCAAGGCTAAATTGGATGAAATTGCTGAGAAGCAGAGACAAAGGGAGCGAGAATTGGAAGAAAAGGAAAGACTGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAACTGATCCGCCTGCTAGACCTGATGTTGCTACCGGTTCTCAGCCTCTGGAGTCTGGAACCGCTGGTCCTGCTGCAGCAGCCGCTGCCTCCGCCACATCTCCAGCAAAATACGTGCCAAGGTTTCGACGGACAGAAGGCTCTAGCCCTAATGCACCACCACCTGAATCCGATCGATGGGGAAGCAGCAGGCCTAATAATCGACCATCTCAACCGGATAGCTGGCGCAGTGATGACCGTAGACCGGCTCTTGGAAGTTCAAGGTCGTCATGGTCCTCATCCCGAGCTTCTACTCGTTCTGGCACGGACCGTTGA | 2382 | 44.0 | MTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDWNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVSPYDSKHGASHLELEHEKERNLRMVNLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQDVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQSMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNVVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVGKASKTGDILPDLADIVDKEHKRLLARKLIIEKRKEEQERQLLEMEREEESKRLKLLKISEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKRKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLHEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVMNLRQEEFSRRRAEREEQIRQVIQARKAEREAKRKTIFYVRREEERIRILREEEEARKREEAERKKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGRSTDPPARPDVATGSQPLESGTAGPAAAAAASATSPAKYVPRFRRTEGSSPNAPPPESDRWGSSRPNNRPSQPDSWRSDDRRPALGSSRSSWSSSRASTRSGTDR | 793 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32859888 | 32866373 | - | CcPI632755_03g018220.1 | Cco03g1822 | 175181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g1822 | 793 | Coils | Coil | 427 | 466 | - | - | |
Cco03g1822 | 793 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 265 | 356 | IPR000717 | - | |
Cco03g1822 | 793 | Coils | Coil | 493 | 523 | - | - | |
Cco03g1822 | 793 | Gene3D | UVR domain | 41 | 92 | - | - | |
Cco03g1822 | 793 | MobiDBLite | consensus disorder prediction | 773 | 793 | - | - | |
Cco03g1822 | 793 | MobiDBLite | consensus disorder prediction | 636 | 793 | - | - | |
Cco03g1822 | 793 | MobiDBLite | consensus disorder prediction | 739 | 761 | - | - | |
Cco03g1822 | 793 | Coils | Coil | 623 | 682 | - | - | |
Cco03g1822 | 793 | MobiDBLite | consensus disorder prediction | 636 | 685 | - | - | |
Cco03g1822 | 793 | Coils | Coil | 556 | 589 | - | - | |
Cco03g1822 | 793 | ProSiteProfiles | PCI domain profile. | 140 | 337 | IPR000717 | - | |
Cco03g1822 | 793 | Gene3D | - | 186 | 318 | - | - | |
Cco03g1822 | 793 | Gene3D | - | 93 | 167 | - | - | |
Cco03g1822 | 793 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 784 | IPR027512 | GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER) | |
Cco03g1822 | 793 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 41 | 92 | - | - | |
Cco03g1822 | 793 | Pfam | eIF3a, PCI domain, TPR-like region | 2 | 231 | IPR054711 | - | |
Cco03g1822 | 793 | Coils | Coil | 385 | 419 | - | - | |
Cco03g1822 | 793 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 176 | 318 | - | - | |
Cco03g1822 | 793 | Pfam | PCI domain | 262 | 332 | IPR000717 | - | |
Cco03g1822 | 793 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 92 | 166 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0832 | Cco-Chr3:9204012 | Cco03g1822 | Cco-Chr3:32859888 | 0.00E+00 | dispersed | |
Cco03g0833 | Cco-Chr3:9232646 | Cco03g1822 | Cco-Chr3:32859888 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g1822 | K03254 | - | csv:101209344 | 1182.93 |