Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1822 ATGACAGCTCATCGTGCCTTCCAGTTCTGTAAGGTGTATAAAAGAACAACTGAATTTCGCAGATTATGTGAAATTATCCGAAATCATCTTGCTAATCTCAACAAGTACAGAGACCAAAGAGATCGGCCCGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAACTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTATGTCAAATTAACAGAGATCTTCTGGATATCGGATTGGAATCTTTACCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTACAGCTGATAGCTTCATCTGTTGTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCCAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGAAATTTGAGGATGGTGAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAACTCAGGATGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTACTAAACAAAATATCAAAACTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCCACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGTCTATGAAAATTGAGAGTCTATCACAGATGATCCCATTTTTTGACTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTTATTGCCATGAAAGTTGATCATTCAAGGAACGTTGTGCTATTTGGCAATTTGGGTATTGAATCCGATGGGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTGGGAAAGCATCAAAAACAGGTGACATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGCTGCTTGCTCGGAAATTAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAAAAGGTTAAAATTACTGAAGATAAGCGAAGAGGCTGAGCAGAAGCGGCTTGCAGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGAGAAATAGAAGAACGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAGGAAGGGAAGCAGGAAGCCAGTTCTTGACTCTGAAAAGTTGACGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAGAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCATGAAGAGAGAATGATTCACGAACGTGATCAGCAGCTTGAGGTTGAGCTAAGCAAGCAGCGCCACGAAGGTGACCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATGAATCTTCGCCAAGAGGAGTTCAGCAGACGTAGAGCTGAGAGAGAAGAACAGATCAGGCAAGTAATTCAGGCTCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGACAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCCGAGAGGAAAAAGAGAGAAGAAGCTGAACGCAAGGCTAAATTGGATGAAATTGCTGAGAAGCAGAGACAAAGGGAGCGAGAATTGGAAGAAAAGGAAAGACTGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAACTGATCCGCCTGCTAGACCTGATGTTGCTACCGGTTCTCAGCCTCTGGAGTCTGGAACCGCTGGTCCTGCTGCAGCAGCCGCTGCCTCCGCCACATCTCCAGCAAAATACGTGCCAAGGTTTCGACGGACAGAAGGCTCTAGCCCTAATGCACCACCACCTGAATCCGATCGATGGGGAAGCAGCAGGCCTAATAATCGACCATCTCAACCGGATAGCTGGCGCAGTGATGACCGTAGACCGGCTCTTGGAAGTTCAAGGTCGTCATGGTCCTCATCCCGAGCTTCTACTCGTTCTGGCACGGACCGTTGA 2382 44.0 MTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDWNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVSPYDSKHGASHLELEHEKERNLRMVNLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQDVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQSMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNVVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVGKASKTGDILPDLADIVDKEHKRLLARKLIIEKRKEEQERQLLEMEREEESKRLKLLKISEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKRKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLHEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVMNLRQEEFSRRRAEREEQIRQVIQARKAEREAKRKTIFYVRREEERIRILREEEEARKREEAERKKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGRSTDPPARPDVATGSQPLESGTAGPAAAAAASATSPAKYVPRFRRTEGSSPNAPPPESDRWGSSRPNNRPSQPDSWRSDDRRPALGSSRSSWSSSRASTRSGTDR 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32859888 32866373 - CcPI632755_03g018220.1 Cco03g1822 175181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1822 793 Coils Coil 427 466 - -
Cco03g1822 793 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 265 356 IPR000717 -
Cco03g1822 793 Coils Coil 493 523 - -
Cco03g1822 793 Gene3D UVR domain 41 92 - -
Cco03g1822 793 MobiDBLite consensus disorder prediction 773 793 - -
Cco03g1822 793 MobiDBLite consensus disorder prediction 636 793 - -
Cco03g1822 793 MobiDBLite consensus disorder prediction 739 761 - -
Cco03g1822 793 Coils Coil 623 682 - -
Cco03g1822 793 MobiDBLite consensus disorder prediction 636 685 - -
Cco03g1822 793 Coils Coil 556 589 - -
Cco03g1822 793 ProSiteProfiles PCI domain profile. 140 337 IPR000717 -
Cco03g1822 793 Gene3D - 186 318 - -
Cco03g1822 793 Gene3D - 93 167 - -
Cco03g1822 793 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 784 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Cco03g1822 793 FunFam Eukaryotic translation initiation factor 3 subunit A 41 92 - -
Cco03g1822 793 Pfam eIF3a, PCI domain, TPR-like region 2 231 IPR054711 -
Cco03g1822 793 Coils Coil 385 419 - -
Cco03g1822 793 FunFam Eukaryotic translation initiation factor 3 subunit A 176 318 - -
Cco03g1822 793 Pfam PCI domain 262 332 IPR000717 -
Cco03g1822 793 FunFam Eukaryotic translation initiation factor 3 subunit A 92 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0832 Cco-Chr3:9204012 Cco03g1822 Cco-Chr3:32859888 0.00E+00 dispersed
Cco03g0833 Cco-Chr3:9232646 Cco03g1822 Cco-Chr3:32859888 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1822 K03254 - csv:101209344 1182.93