Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1823 ATGAAGCACTTGTTCTTGAAGTTCAATGAACTAACAAAGTATCTAAAAAGATGGAGAAACTCTGAAAATGCTTCTGATGTATGTGGGAGAGAAGCTGCAGAAACAATGGCAAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTCCGGGAGTATGAATATCAATGGTTCGAGGAACTTTGTCTCAAGTTTTTCGAAGAGGGGTGAGAAAGGAATCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGCCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGCCATGGACCATGGGGTCATTTTGTTGCAAAGAAGGTTAGAGAGTCAATGCCAACTGCTTTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAACTCAACTCAGCTAAAACACATCTTCATTTCAATTTGTGGGAGCATTCTTATATAGAAGCTTGTGCTGTGGTGGATCAAGAACTCGAGCGACACCGTAAAATTGACACGTTTCATAGTGGAACAACGGCCCTTTCCATCGTTCGACAAGGTGATACAATTGTCATAGCAAACCTTGGTGACTCCCGGGCCGTTTTGGCTACAACTTCTAATGATGGAAACTCGACGCCGTCACCAATTCAGCTCACTGTCGATTTCAAACCGAATCTACCTCAGGAAGCTGAAAGGATAACACAATGCAATGGGAGGGTTTTCTGCTTGCAAGATGAACCAGGGACTCCCCGTCTTTGGTTGCCGAACGGGGAAACGCCGGGGTTGTCAATGTCGAGATCGTTTGGCGATTTTTGCGTTAAGCATTTTGGACTTATTTCCGTGCCTGATGTAACACAAAGAAGTTTAACCAACAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGACGTCGTCACGAATCAAGAAGCTGTGCAAATCGTACATTCGACTGTTGATAGACAAAAATCTGCTCGACGACTGGTTGATTATGCTACTCGTGCATGGAAGCGGAAGAGGCCGAAAATTGCAACGGACGACATGTCGGTTATCGTCCTCTACCTACATTCTTCACCTTTGCATCAACAACCCTTTTGTGTATTGTAG 1107 43.72 MKHLFLKFNELTKYLKRWRNSENASDVCGREAAETMAKSAKKKDLIIHGSGSMNINGSRNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRESMPTALLCNWQEALVQTSLHPHLELNSAKTHLHFNLWEHSYIEACAVVDQELERHRKIDTFHSGTTALSIVRQGDTIVIANLGDSRAVLATTSNDGNSTPSPIQLTVDFKPNLPQEAERITQCNGRVFCLQDEPGTPRLWLPNGETPGLSMSRSFGDFCVKHFGLISVPDVTQRSLTNKDLFVVLATDGIWDVVTNQEAVQIVHSTVDRQKSARRLVDYATRAWKRKRPKIATDDMSVIVLYLHSSPLHQQPFCVL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32872880 32874749 - CcPI632755_03g018230.1 Cco03g1823 175182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1823 368 Gene3D - 50 357 IPR036457 -
Cco03g1823 368 CDD PP2Cc 60 355 IPR001932 -
Cco03g1823 368 ProSiteProfiles PPM-type phosphatase domain profile. 61 355 IPR001932 -
Cco03g1823 368 Pfam Protein phosphatase 2C 85 334 IPR001932 -
Cco03g1823 368 SMART PP2C_4 53 353 IPR001932 -
Cco03g1823 368 PANTHER PROTEIN PHOSPHATASE 42 353 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco03g1823 368 FunFam Probable protein phosphatase 2C 34 52 357 - -
Cco03g1823 368 SUPERFAMILY PP2C-like 57 356 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1823 Cco-Chr3:32872880 Cco06g0490 Cco-Chr6:5377449 2.20E-102 dispersed
Cco02g1646 Cco-Chr2:29069297 Cco03g1823 Cco-Chr3:32872880 1.70E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1823 - - - 0.0