Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1834 ATGGTTTGTGAAGAAGAAGCTGTAATCCAAAAGGTTTGTGAATTATATGATGAAATCTCAAGCCTTGAAAGCCTAAAACCTTGTAACCATGTCGACACTCTCTTCACTAAATTGGTGGTCACGTGCATGCCACCCACCTCCCCTCATTTCCATATCAATTCACTTTCAAAACCACTTCAACAAATGAGATCAAATCTCATTAGCCTTTGTGGTCAAGCTGAGTCTCTTTTAGAGTCTCATTTTTCTGATCTCTTAGCCAAATTTGATTCCCCTATTCACCATCTCCATGTCTTCCCTTACTTCTCTAATTACCTTAAACTTAGTCTCCTTGAATTCTCCATCCTTCGTCGCCACTGCCCCGTCGTGCCCTCTACCGTCGCCTTCGTCGGCTCTGGCCCTCTTCCTCTTACCTCCATCGTCCTCGCCACTCGCCACCTCACCTCCGCTGTCTTCCACAACTACGATCTCGACCCCCTTGCTAATTCCAAGGCGTTGAAGTTGGTGTCACTCGACCCGGACCTGAAGGCGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACGGAGGAACTGAAACAGTACGAGGTTGTGTTTTTGGCAGCTCTTGTAGGAATGGAGAAGGAAGAGAAATTGAAAGTGATTAAGCATTTGTCAGAGTTCATGTCAGAAGGAGCTTATTTGATGGTGAGAAGTGCTCATGGAGGAAGAGCTTTTCTATATCCTGTGGTTGAAGATTGTGATTTGGTAGGGTTTGAGGTTTTATCTGTGTTCCATCCCACTGATGAGGTTATAAACTCGGTAATAATTGCACGAAAAAAGACAAGTTTCTATAACGATAACGATAACAGTAATGATAACAACGACAAGAGTTGTTGTTTGTCTGTTAATTCAGATAAACAAGAGGAAGATGAGAATGAGAAGGTGATGATTAGTAGCAGTGGTATTGATCATAAGAATAATAACAATGGGGTTGTGCATAATAACAAATGTTCTGAGATTCAAAGCTTCAATAATCATGGAGGTAAGATTGAGGAATTTGCCATGGAAGCAGCAGCTGAGTAA 1065 42.54 MVCEEEAVIQKVCELYDEISSLESLKPCNHVDTLFTKLVVTCMPPTSPHFHINSLSKPLQQMRSNLISLCGQAESLLESHFSDLLAKFDSPIHHLHVFPYFSNYLKLSLLEFSILRRHCPVVPSTVAFVGSGPLPLTSIVLATRHLTSAVFHNYDLDPLANSKALKLVSLDPDLKARMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLKVIKHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVIIARKKTSFYNDNDNSNDNNDKSCCLSVNSDKQEEDENEKVMISSSGIDHKNNNNGVVHNNKCSEIQSFNNHGGKIEEFAMEAAAE 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33027459 33029209 + CcPI632755_03g018340.1 Cco03g1834 175193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1834 354 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 278 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco03g1834 354 PANTHER NICOTIANAMINE SYNTHASE 3 5 301 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco03g1834 354 Gene3D Vaccinia Virus protein VP39 7 275 IPR029063 -
Cco03g1834 354 MobiDBLite consensus disorder prediction 288 317 - -
Cco03g1834 354 MobiDBLite consensus disorder prediction 296 312 - -
Cco03g1834 354 Pfam Nicotianamine synthase protein 5 275 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1621 Cco-Chr2:28833283 Cco03g1834 Cco-Chr3:33027459 4.60E-99 dispersed
Cco02g1622 Cco-Chr2:28846480 Cco03g1834 Cco-Chr3:33027459 2.10E-84 dispersed
Cco03g1834 Cco-Chr3:33027459 Cco06g1519 Cco-Chr6:25688122 3.10E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1834 K05953 - csv:101218907 567.385