Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1851 ATGGTTCTTAAAAGTTTGTTACTTGCTGAATGTGGTGGCTGGTGGGACTTAAATGGTGTGGTGTGGTGTTCCATGTTGAAGATGATAATGGTGGCTAAAGAAGAGCGAAGTCTCTCTCATTGCCATTTGCGCACGAGGTCCGTGGCATCGCAACGCAGCTTCTCAAGTTTTGGTGAAGTCCTATGTCCAAACTACACTAGGGTGCCTTTGGTTAACAGAAGTGGATTTGACCGGCAATACAAAATGGATTACCGGGGTTACAGTAGTAGACTGGAAACAAACAACCCAAATAAAGGCTATGCTCAGGAGCAAGGATCTCTTGCTGATGACTTTATTGATGATTTTCGCTTGCCCATCAACCATAAACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACTTCATCAAATGTGGGATATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAGCGGAAAAAACTTGATGTTGAGGTGGAAGAGACAGAAGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCAATGGAATTTGAAGCTCATCTCAGCTCATATGATCATAATCATAGGAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACGTGAAGAGAGAGAGATGGCAAGATTTGCTCAAATTGCGGATGCCCGTAAGAAGCAGCAGCAGATGCTGGAGCAACAAGAAAGAGCAGCCGAGGCTCCTGTTTCTACTGAACTTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGCCACAAAGAAACCGAAAGTAGCACCTGTAGCTTCAGTTTTCGGGAATGATAGCGATGACGAATAG 1143 42.34 MVLKSLLLAECGGWWDLNGVVWCSMLKMIMVAKEERSLSHCHLRTRSVASQRSFSSFGEVLCPNYTRVPLVNRSGFDRQYKMDYRGYSSRLETNNPNKGYAQEQGSLADDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMARFAQIADARKKQQQMLEQQERAAEAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKNIFGGATKKPKVAPVASVFGNDSDDE 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33186128 33190253 - CcPI632755_03g018510.1 Cco03g1851 175210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1851 380 MobiDBLite consensus disorder prediction 325 355 - -
Cco03g1851 380 SUPERFAMILY beta-beta-alpha zinc fingers 219 272 IPR036236 -
Cco03g1851 380 MobiDBLite consensus disorder prediction 271 380 - -
Cco03g1851 380 SMART G-patch_5 141 186 IPR000467 GO:0003676(InterPro)
Cco03g1851 380 ProSitePatterns Zinc finger C2H2 type domain signature. 240 262 IPR013087 -
Cco03g1851 380 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 82 380 - -
Cco03g1851 380 Coils Coil 301 321 - -
Cco03g1851 380 ProSiteProfiles G-patch domain profile. 143 188 IPR000467 GO:0003676(InterPro)
Cco03g1851 380 MobiDBLite consensus disorder prediction 271 301 - -
Cco03g1851 380 Pfam G-patch domain 144 184 IPR000467 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0840 Cco-Chr2:9728129 Cco03g1851 Cco-Chr3:33186128 1.10E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1851 - - - 0.0