Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g1856 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAACCTATTTCGGCCGCAAAATCGCAATTGATGCCAGCATGAGTATTTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGCTGACCAACGAAGCTGGTGAAGTCACTAGCCACTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGTTATTCAAAAAGAGTAGATGCTACCGAGGACCTAGCAGATGCTATCGAGGTTGGCAACAAGGAGGACATTGAGAAATTTAGTAAAAGGACGGTGAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTCTTGAGGCTCATGGGAGTGCCTGTTATCGAGGCTCCCTCAGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCGTCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCTAAGATTTTGGAGGAGCTGAACCTCACCATGGATCAGTTTATCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAAACTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTATGTACTGACGAAGAGCAGCTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAAAGAGTGACGAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAATCATTTTTCAAGCCCGTCACTAATTCTTCAGTATCCATTAAACGAAAGGTAAACAAATGTGTACTTAGGTCTCCTAAACCAGGAGCCCAACATAAAGTCTCCCCACAAGCATTTTATTCGTCAAGGACGAATGCCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCCTCCAAGTACTCGGGGTCAGGGCCATTAGTTATGGCTGAGACATCAGAAAAGCCTACCAAACAAGCAATAAGTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG 1308 43.04 MGIKGLTKLLADNAPKGMKEQKFETYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRVDATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIETILENINKERYQIPDDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNSSVSIKRKVNKCVLRSPKPGAQHKVSPQAFYSSRTNAIGSLGMSMLDHSSKYSGSGPLVMAETSEKPTKQAISKKSKSSGGKRK 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33279492 33291158 - CcPI632755_03g018560.1 Cco03g1856 175215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g1856 435 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
Cco03g1856 435 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cco03g1856 435 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cco03g1856 435 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cco03g1856 435 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cco03g1856 435 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cco03g1856 435 SMART 53exo3 29 299 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Cco03g1856 435 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cco03g1856 435 CDD H3TH_FEN1-Euk 222 289 - -
Cco03g1856 435 MobiDBLite consensus disorder prediction 403 435 - -
Cco03g1856 435 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Cco03g1856 435 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cco03g1856 435 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Cco03g1856 435 FunFam Flap endonuclease 1 10 222 - -
Cco03g1856 435 FunFam Flap endonuclease 1 219 286 - -
Cco03g1856 435 Gene3D - 10 222 - -
Cco03g1856 435 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Cco03g1856 435 CDD PIN_FEN1 4 332 - -
Cco03g1856 435 Gene3D - 223 286 - -
Cco03g1856 435 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Cco03g1856 435 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 352 IPR036279 -
Cco03g1856 435 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 427 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Cco03g1856 435 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Cco03g1856 435 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1856 Cco-Chr3:33279492 Cco10g1430 Cco-Chr10:27378749 6.20E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g1856 K04799 - csv:101204273 702.205