Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0017 ATGGCTTTTTTGTGTTGTCATTTCTCCATTTTGCTTGTTGTTGGGCTTCTTTCAAATTCCCAGTTTTTGAGAGCTGAGCTTGATGATCAAATCACTATGTCCAACATTAGAGAGGAGCTTCAAGTGCCTGGGTGGAGCTCCAATATCTCTGAGTACTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGTAATCTAACTCTGATTTCTGAGCTCAAAGCTCTGAAATGGCTTGACCTATCCTACAATGACTTCCACGGCGAGATTCCATCAAGTTTTTCGAACTTACTGGAGCTAGAATTCCTTGATTTGTCTTTGAACAAGTTTGATGGTTCGATCCCGCCCGAGTTTGGTGGTCTCAAGAACCTCAAATCATTGAACCTCTCCAATAATCTTTTGGTGGGAGAAATTCCAGATGAGCTTCAAGGCTTAGGGAAGTTGCAGGATTTTCAAATTTCTAGCAACAGGTTGAGTGGTTTAATTCCAAGCTGGGTTGGAAATTTGAGTCATCTACGTGTTTTTACAGCCTATGAGAATGACTTTGGCGGTGTAATTCCTGATAATCTTGGTTCAGTTTCTGTGCTCCAAGTGTTGAATCTGCATACCAACAGGCTTGAAGGCATGATTCCCCGAAGCATTTTCACTTCGGGAAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGGCTGGCAATATTCCTGAAGAGATTGGGAACTGCAAAAGGCTTACTAGCGTTCGAATTGGGAACAATGATCTTGTTGGTGCGATTCCTCCAGCCATTGGACATGTTAGTAGCCTTGCTTACTTTGAAGTGGATAGCAATCACCTTTCAGGCAATATACCGTCTCAGTTTTCGCAGTGCTCTAATCTTACTCTGCTTAATCTAGCCTCGAATGGATTCACTGGTGTGATTCCTCCTGAACTTGGAGAGCTGATGAATCTTCAGGAGCTTATTCTTTCTGGCAATAGCCTGTATGGTGACATTCCTAGATCGATGCTTGGATGCAAAAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGAACTATTCCTTCAGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCCAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGGCTCGGTAGTAACTATCTAACTGGAAGCATCCCTTCTGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCTGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCGGGCGGTATTCCTTCTGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACTGGTTCAATTCCATTTTTTGTTCCATTCCAGAAAAGTGCAAACTCCAGCTTTCTGGGGAACGAAGGCCTTTGCGGGGTGCCACTAAGCATTTTGTGTAAGAATTCGATTGGTTCAGACAATCAAGATTACCATCATAAGGTCTCATACAAGATCATCCTGGCTGTCATCGGTTCCGGGCTAGCAGTTTTTGTATCGGTTACTATAGTTGTTTTACTTTTTGTGATGAAAGAAAAGCAGGAGAAAGCAGCAAAATCTTCAGGGACCACAGATGATGAAACTATCAACGATCAACCACCAATAATAGCAGGAAATGTCTTCGATGACAATCTCCGACAGGAAATAGATCTTGATACAGTCGTGAAAGCAACTTTGAAGGACTCAAACAAGCTCATCTTTGGCACTTTTAGTAGTGTTTATAAGGCGGTTATGCCTTCGGGTATGATCGTATCAGTTAAGAGACTAAAATCCATGGATAAGACTATCATTCATCATCAAAGCAAGATGATTAGAGAGCTTGAAAGGCTTGGCAAACTGAGTCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCACAAGTACTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAGCAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCTATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATCTCATCATCTAATGTTCTTTTAGATGCTAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCGAGAGGAACTGCAAGTATCAGTGCAGTGGCAGGTTCATTTGGCTACATTCCACCAGAATATGCATATACAATGCAAGTTACGGCCCCGGGAAACGTTTATAGCTACGGTGTCATCTTGCTTGAGATCCTCACTACCAGATTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATAGTGCTCCTTCCAGGGGTGAAACACCCGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCATTTGGCTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCTAAAATGAAGAAGGTGGTGGAAATGCTTCTGGAGATCAAGCAAAATTGA 2676 41.85 MAFLCCHFSILLVVGLLSNSQFLRAELDDQITMSNIREELQVPGWSSNISEYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTLISELKALKWLDLSYNDFHGEIPSSFSNLLELEFLDLSLNKFDGSIPPEFGGLKNLKSLNLSNNLLVGEIPDELQGLGKLQDFQISSNRLSGLIPSWVGNLSHLRVFTAYENDFGGVIPDNLGSVSVLQVLNLHTNRLEGMIPRSIFTSGKLEILVLTQNRLAGNIPEEIGNCKRLTSVRIGNNDLVGAIPPAIGHVSSLAYFEVDSNHLSGNIPSQFSQCSNLTLLNLASNGFTGVIPPELGELMNLQELILSGNSLYGDIPRSMLGCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGGIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGVPLSILCKNSIGSDNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTTDDETINDQPPIIAGNVFDDNLRQEIDLDTVVKATLKDSNKLIFGTFSSVYKAVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHKYLPNGTLAQLLHESTKQPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQN 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 240086 242886 - CcPI632755_04g000170.1 Cco04g0017 175242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0017 891 Pfam Leucine rich repeat 329 388 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 SUPERFAMILY L domain-like 43 297 - -
Cco04g0017 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 689 891 - -
Cco04g0017 891 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 227 522 - -
Cco04g0017 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 580 688 - -
Cco04g0017 891 Gene3D Ribonuclease Inhibitor 176 274 IPR032675 -
Cco04g0017 891 Gene3D Ribonuclease Inhibitor 26 175 IPR032675 -
Cco04g0017 891 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 66 890 IPR050647 -
Cco04g0017 891 SMART LRR_typ_2 327 351 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 448 471 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 159 182 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 375 399 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 207 231 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 111 134 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 87 110 IPR003591 -
Cco04g0017 891 SMART LRR_typ_2 135 158 IPR003591 -
Cco04g0017 891 Gene3D Transferase(Phosphotransferase) domain 1 689 891 - -
Cco04g0017 891 SUPERFAMILY L domain-like 200 518 - -
Cco04g0017 891 ProSiteProfiles Protein kinase domain profile. 610 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0017 891 Pfam Leucine Rich Repeat 233 255 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 Pfam Leucine Rich Repeat 450 472 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 Pfam Leucine Rich Repeat 430 448 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 Pfam Leucine Rich Repeat 305 327 IPR001611 GO:0005515(InterPro)
Cco04g0017 891 SUPERFAMILY Protein kinase-like (PK-like) 611 886 IPR011009 -
Cco04g0017 891 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0017 891 Gene3D Ribonuclease Inhibitor 275 526 IPR032675 -
Cco04g0017 891 Pfam Protein tyrosine and serine/threonine kinase 614 884 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0017 891 CDD STKc_IRAK 619 888 - -
Cco04g0017 891 FunFam Nuclear pore complex protein NUP107 28 178 - -
Cco04g0017 891 Gene3D Phosphorylase Kinase; domain 1 579 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1007 Cco-Chr3:15726129 Cco04g0017 Cco-Chr4:240086 7.60E-39 dispersed
Cco04g0017 Cco-Chr4:240086 Cco05g0416 Cco-Chr5:3441983 3.40E-56 dispersed
Cco04g0017 Cco-Chr4:240086 Cco06g0792 Cco-Chr6:9186963 1.30E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86703 PF00069 Pkinase 4.00E-27 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0017 - - - 0.0