Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0102 ATGGAACTCACCGAGCTTCATTTGAGTTCATCAATGGCGGATTTCCCAAGGTACATAATTCTCTTCCTCATATGGTTAGTTTCCACCTTCACAATTCGCTTCATCTTTGCCAAAAACAAACATAACTCTCGTCTTCCTCCAAGCCCTTTTGCTCTCCCCATTATTGGCCATCTCCATCTCCTGGGTCCGTTGCCCCACAAAGCTTTCCACAAGCTCTCGACCCGCCATGGACCCTTAATGCACCTCCGTTTAGGATCGGTCCCTTGCGTCGTAGTTTCGTCACCCGAAACAGCAAAACAAGTCCTCAAAACATTTGAATCTTCCTTCTCCAATAGACCCCATTTCTCAGCAATTGACTATCTAACCTATGGCTCAGCTGATTTCTCCTTTGCTCCCTATGGACCTTATTGGAAGTTCATGAAGAAACTTTGTATATCGGAGCTCCTCGGCGGCAGGACGCTTGACAGCCTCCTCCCCATGAGAGAGGATGAGATGCGGTGGTTTCTACGGTCATTGCAGTTGAAGGCCACGGAGGGAAAAGAAGTGGATGTTGGAGGAGAGTTAATGAGGCTGAGCAACAATGTGATATCCAGAATGACATTGGGGAAAAGATGTGCTGAGGAAGAAGAGGAGGCTGAGGGCATAAGGAAATTAGTGAAGGATGTAGCTGAACTTTCAGGGACTTTTAATGTTTCAGATTATATTTGGTTTTGCAAGAATTTGGACTTGCAAGGGCTTGGGAAGAGGCTTAAGGAAGTTCATGAGAGGTTTGATGAGATGATGGAGAGAATGATAAAAGAACATGAAGAGAATAATGGTGATGGGAAAGTGAAGGATTTGCTTGATATTTTGCTTCTTAAGTTTGGAGATCAAAACTCAGAAGTCAAGTTGACTAGAGAGAACATTAAGGCCTTTGTTATGGACATATTTGCTGCAGGAACAGACGCATCAGCAATAACAATAGAATGGGCATTAGCAGAGCTAATAAACCATCCTAACATAATGGAGAAAGCAAGAGAAGAAGTTCACAGAGTTGTAGGAAAGAATAGAGTGATCGAAGAATCAGACATTGCCAATCTTCCTTATCTCCAAGCAATAGTAAAAGAGACCTTAAGGCTTCACTCAAGCCCATTGGTAGTAAGGGAATCAACTGACAGTTGCACAATAAATGGTTATGAGATTCCACCAAAAACTCAAGTTTATGTGAATGTTTGGGCCATTGGGAGAGACCCAAATCACTGGGAAAACCCTCTTGAGTTTGAGCCAGAAAGGTTTATGGACAAAGAAGGGAGTGTGAATAGTGATTTGAGAGGGCAAAATTTTCAGTTGTTGCCATTTGGGAGTGGGAGAAGAAGCTGTCCTGGAATAACTCTTGCTTTGCTAATGGTTCAGACAACTTTGGGTGGTATGATTCAATGCTTTGATTGGAAGGTTACTGGAGGAAATGGGAAAGTTGATATGGAAGAAGGGCCTGGCCTTACACTTCCTAGGGCACACCCTTTGGTTTGTGTTCCAAATCCTTGTCTTACTCCATTTCCACCACTTTGA 1548 43.35 MELTELHLSSSMADFPRYIILFLIWLVSTFTIRFIFAKNKHNSRLPPSPFALPIIGHLHLLGPLPHKAFHKLSTRHGPLMHLRLGSVPCVVVSSPETAKQVLKTFESSFSNRPHFSAIDYLTYGSADFSFAPYGPYWKFMKKLCISELLGGRTLDSLLPMREDEMRWFLRSLQLKATEGKEVDVGGELMRLSNNVISRMTLGKRCAEEEEEAEGIRKLVKDVAELSGTFNVSDYIWFCKNLDLQGLGKRLKEVHERFDEMMERMIKEHEENNGDGKVKDLLDILLLKFGDQNSEVKLTRENIKAFVMDIFAAGTDASAITIEWALAELINHPNIMEKAREEVHRVVGKNRVIEESDIANLPYLQAIVKETLRLHSSPLVVRESTDSCTINGYEIPPKTQVYVNVWAIGRDPNHWENPLEFEPERFMDKEGSVNSDLRGQNFQLLPFGSGRRSCPGITLALLMVQTTLGGMIQCFDWKVTGGNGKVDMEEGPGLTLPRAHPLVCVPNPCLTPFPPL 515
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2037976 2040315 - CcPI632755_04g001020.1 Cco04g0102 175327
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0102 515 SUPERFAMILY Cytochrome P450 39 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 Pfam Cytochrome P450 46 503 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 FunFam Cytochrome P450 family protein 37 503 - -
Cco04g0102 515 Gene3D Cytochrome P450 31 503 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PANTHER CYTOCHROME P450 93A3-LIKE 19 506 - -
Cco04g0102 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco04g0102 515 CDD CYP93 77 505 - -
Cco04g0102 515 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco04g0102 515 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0102 Cco-Chr4:2037976 Cco10g1713 Cco-Chr10:30670945 8.10E-167 dispersed
Cco04g0102 Cco-Chr4:2037976 Cco09g0419 Cco-Chr9:3760938 1.30E-116 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0102 K24188 - csv:101213143 881.322