Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco04g0102 | ATGGAACTCACCGAGCTTCATTTGAGTTCATCAATGGCGGATTTCCCAAGGTACATAATTCTCTTCCTCATATGGTTAGTTTCCACCTTCACAATTCGCTTCATCTTTGCCAAAAACAAACATAACTCTCGTCTTCCTCCAAGCCCTTTTGCTCTCCCCATTATTGGCCATCTCCATCTCCTGGGTCCGTTGCCCCACAAAGCTTTCCACAAGCTCTCGACCCGCCATGGACCCTTAATGCACCTCCGTTTAGGATCGGTCCCTTGCGTCGTAGTTTCGTCACCCGAAACAGCAAAACAAGTCCTCAAAACATTTGAATCTTCCTTCTCCAATAGACCCCATTTCTCAGCAATTGACTATCTAACCTATGGCTCAGCTGATTTCTCCTTTGCTCCCTATGGACCTTATTGGAAGTTCATGAAGAAACTTTGTATATCGGAGCTCCTCGGCGGCAGGACGCTTGACAGCCTCCTCCCCATGAGAGAGGATGAGATGCGGTGGTTTCTACGGTCATTGCAGTTGAAGGCCACGGAGGGAAAAGAAGTGGATGTTGGAGGAGAGTTAATGAGGCTGAGCAACAATGTGATATCCAGAATGACATTGGGGAAAAGATGTGCTGAGGAAGAAGAGGAGGCTGAGGGCATAAGGAAATTAGTGAAGGATGTAGCTGAACTTTCAGGGACTTTTAATGTTTCAGATTATATTTGGTTTTGCAAGAATTTGGACTTGCAAGGGCTTGGGAAGAGGCTTAAGGAAGTTCATGAGAGGTTTGATGAGATGATGGAGAGAATGATAAAAGAACATGAAGAGAATAATGGTGATGGGAAAGTGAAGGATTTGCTTGATATTTTGCTTCTTAAGTTTGGAGATCAAAACTCAGAAGTCAAGTTGACTAGAGAGAACATTAAGGCCTTTGTTATGGACATATTTGCTGCAGGAACAGACGCATCAGCAATAACAATAGAATGGGCATTAGCAGAGCTAATAAACCATCCTAACATAATGGAGAAAGCAAGAGAAGAAGTTCACAGAGTTGTAGGAAAGAATAGAGTGATCGAAGAATCAGACATTGCCAATCTTCCTTATCTCCAAGCAATAGTAAAAGAGACCTTAAGGCTTCACTCAAGCCCATTGGTAGTAAGGGAATCAACTGACAGTTGCACAATAAATGGTTATGAGATTCCACCAAAAACTCAAGTTTATGTGAATGTTTGGGCCATTGGGAGAGACCCAAATCACTGGGAAAACCCTCTTGAGTTTGAGCCAGAAAGGTTTATGGACAAAGAAGGGAGTGTGAATAGTGATTTGAGAGGGCAAAATTTTCAGTTGTTGCCATTTGGGAGTGGGAGAAGAAGCTGTCCTGGAATAACTCTTGCTTTGCTAATGGTTCAGACAACTTTGGGTGGTATGATTCAATGCTTTGATTGGAAGGTTACTGGAGGAAATGGGAAAGTTGATATGGAAGAAGGGCCTGGCCTTACACTTCCTAGGGCACACCCTTTGGTTTGTGTTCCAAATCCTTGTCTTACTCCATTTCCACCACTTTGA | 1548 | 43.35 | MELTELHLSSSMADFPRYIILFLIWLVSTFTIRFIFAKNKHNSRLPPSPFALPIIGHLHLLGPLPHKAFHKLSTRHGPLMHLRLGSVPCVVVSSPETAKQVLKTFESSFSNRPHFSAIDYLTYGSADFSFAPYGPYWKFMKKLCISELLGGRTLDSLLPMREDEMRWFLRSLQLKATEGKEVDVGGELMRLSNNVISRMTLGKRCAEEEEEAEGIRKLVKDVAELSGTFNVSDYIWFCKNLDLQGLGKRLKEVHERFDEMMERMIKEHEENNGDGKVKDLLDILLLKFGDQNSEVKLTRENIKAFVMDIFAAGTDASAITIEWALAELINHPNIMEKAREEVHRVVGKNRVIEESDIANLPYLQAIVKETLRLHSSPLVVRESTDSCTINGYEIPPKTQVYVNVWAIGRDPNHWENPLEFEPERFMDKEGSVNSDLRGQNFQLLPFGSGRRSCPGITLALLMVQTTLGGMIQCFDWKVTGGNGKVDMEEGPGLTLPRAHPLVCVPNPCLTPFPPL | 515 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2037976 | 2040315 | - | CcPI632755_04g001020.1 | Cco04g0102 | 175327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco04g0102 | 515 | SUPERFAMILY | Cytochrome P450 | 39 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 191 | 209 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 403 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 73 | 92 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 97 | 118 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | Pfam | Cytochrome P450 | 46 | 503 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | FunFam | Cytochrome P450 family protein | 37 | 503 | - | - | |
| Cco04g0102 | 515 | Gene3D | Cytochrome P450 | 31 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PANTHER | CYTOCHROME P450 93A3-LIKE | 19 | 506 | - | - | |
| Cco04g0102 | 515 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco04g0102 | 515 | CDD | CYP93 | 77 | 505 | - | - | |
| Cco04g0102 | 515 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco04g0102 | 515 | PRINTS | P450 superfamily signature | 365 | 376 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g0102 | Cco-Chr4:2037976 | Cco10g1713 | Cco-Chr10:30670945 | 8.10E-167 | dispersed | |
| Cco04g0102 | Cco-Chr4:2037976 | Cco09g0419 | Cco-Chr9:3760938 | 1.30E-116 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco04g0102 | K24188 | - | csv:101213143 | 881.322 |