Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0106 ATGCCCCCATTTCTCTTCTTCTTCCTACTCACCTTCTCCTTGTTCGTTTCTTTTACTTCGTCTCTCAACTCCGATGGCCTCTCCCTCCTCGCCCTCAAGGCCGCCATTGAATCCGACCCATCTCACATCCTCGAGTCTTGGTCCGAGTTCGACTCCACCCCATGCCACTGGCCAGGAATCGTCTGCACTCGCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGCCTCACCGGCTACATCCCTTCCGAACTCGGCCTCCTCGATTCCCTCCGCCGCCTCACTCTCGCCTTCAACAATTTCTCTAAACCCATTCCTTCTCATCTCTACAACGCTACGAATCTCGTCGTTCTAGACCTTTCCCACAACTCTCTCTCTGGTTCACTGTCTGATCAAATCGGCGATCTGAAGAAGCTTCGGCATCTCGATTTATCCTCAAACGCCCTCAATGGCTCTCTCCCTAATCGCCTCACTGACCTAACCGAACTCGTCGGGACTCTCAATTTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCTTCCTTCGGCAATCTCCCGCTGATCGTGAATCTCGACGTCCGTCACAACAATCTCACCGGAAAAATCCCTCAAGTGGGTTCGCTGTTGAATCAAGGCCCAACGGCGTTCTCCGGAAACCCGAGTCTGTGTGGGTTTCCGTTACAGACGCCATGTCCGGAAGCACAGAATCCGAATGCCTTTCCGGAGAATCCTCAGAATCCCAAGTCACTGAACCCGAACTTCCCGGGCTACGGCGGCCGGAGAGAGAGTAGCGGTCGTGGGGTGGCCGGGTCGGCGGCGGTGGCAGTGGTGTCGTCGATCTTCGCAGTTGTGGGGGCGGTGTCGCTGACGGTGTGGTGGTTCCGGAGGAAGGCGGTAGTGGGGAGGCTGGAAGAGGGCAAAACTGGAAAGGGCAGTCCGGAAGGGGAAAGTTGCGGGGAGTTGGAAGGGCAAGATGGTAAATTCGTGGTGATGGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGGAAGAGTAGGAGTGGGATAGTGTACAAAGTAGTGGCGGGGAGGGGATCTAGTGCGGGCGCGAGTATTGTAGCTGTAAGGAGACTTAACGATGGTGATGCCACGTTGACGTTTAAGGATTTTGAGAATGAGATCGAGGCCATTGGTAGGGTTCAGCATCCCAACATTGTACGGTTGAGAGCTTATTATTATGCAACTGACGAGAAATTGCTGGTCACTGATTTCATCAAGAATGGAAGCTTGCACACCGCCCTACATGGAAGTCCCTCCAGTTGTTTGTCACCTCTGCCATGGTCTGCCAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATACATTCATGAATTTGGTGCTCGGAAATACGTACATGGAAACATCAAAGCGACGAAAATCCTTGTGGATGAGGATTTCGAGGCTTACATTTCAGGTTTTGGACTAGGTCGACTTGGCCAAGGAGCACCTAAGTTGACGGCAACTTCGTCCAAGAAGTTGAGCTCAAATCAGAATATAATAAGCTCAATCATGGGGCCAAGCATTTCAAGTCCCTCAATGATGTACTTGGCGCCGGAGGTACGGGAGTTTGGAGGGAAGTACACGCAGAAATGTGACGTGTACTCGTTCGGGATGGTGCTTCTACAACTTTTGAGCGGTAGATTGGAAAATGATGGGAAGGGGTTGGAATGGTTGGTGAGAAAGGCGTTTGAAGAAGAGCGGCCATTGACAGAGGTTATAGACCCTGCGCTTGTGCCTGAGATTTATGCCAAGAAACAAGTGGTTTCCATGTTTCACATTGCACTGAATTGCACAGAGCTTGACCCCGAGCTGCGTCCCAGAATGAGAATGGTGTCGGAGAGTCTGGATCGAATCAAATCTGAGTGA 1935 52.04 MPPFLFFFLLTFSLFVSFTSSLNSDGLSLLALKAAIESDPSHILESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLTLAFNNFSKPIPSHLYNATNLVVLDLSHNSLSGSLSDQIGDLKKLRHLDLSSNALNGSLPNRLTDLTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNAFPENPQNPKSLNPNFPGYGGRRESSGRGVAGSAAVAVVSSIFAVVGAVSLTVWWFRRKAVVGRLEEGKTGKGSPEGESCGELEGQDGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSSAGASIVAVRRLNDGDATLTFKDFENEIEAIGRVQHPNIVRLRAYYYATDEKLLVTDFIKNGSLHTALHGSPSSCLSPLPWSARLKIAQGAARGLAYIHEFGARKYVHGNIKATKILVDEDFEAYISGFGLGRLGQGAPKLTATSSKKLSSNQNIISSIMGPSISSPSMMYLAPEVREFGGKYTQKCDVYSFGMVLLQLLSGRLENDGKGLEWLVRKAFEEERPLTEVIDPALVPEIYAKKQVVSMFHIALNCTELDPELRPRMRMVSESLDRIKSE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2163067 2169718 - CcPI632755_04g001060.1 Cco04g0106 175331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0106 644 PRINTS Leucine-rich repeat signature 136 149 - -
Cco04g0106 644 PRINTS Leucine-rich repeat signature 115 128 - -
Cco04g0106 644 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Cco04g0106 644 SUPERFAMILY L domain-like 24 228 - -
Cco04g0106 644 Gene3D Phosphorylase Kinase; domain 1 326 425 - -
Cco04g0106 644 MobiDBLite consensus disorder prediction 238 262 - -
Cco04g0106 644 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Cco04g0106 644 ProSiteProfiles Protein kinase domain profile. 344 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0106 644 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Cco04g0106 644 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Cco04g0106 644 SUPERFAMILY Protein kinase-like (PK-like) 349 639 IPR011009 -
Cco04g0106 644 MobiDBLite consensus disorder prediction 238 252 - -
Cco04g0106 644 Gene3D Transferase(Phosphotransferase) domain 1 426 644 - -
Cco04g0106 644 Pfam Protein tyrosine and serine/threonine kinase 350 638 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0106 644 FunFam Leucine-rich repeat receptor-like kinase 27 130 - -
Cco04g0106 644 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515(InterPro)
Cco04g0106 644 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 642 IPR046959 -
Cco04g0106 644 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0106 Cco-Chr4:2163067 Cco11g0759 Cco-Chr11:8496364 1.10E-67 dispersed
Cco04g0106 Cco-Chr4:2163067 Cco05g2510 Cco-Chr5:33458521 2.20E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86704 PF07714 PK_Tyr_Ser-Thr 1.80E-25 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0106 - - - 0.0