Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0128 ATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTTTTTGGCCTTCGCTTTCTTCATTTTGGGTTCTAGTTCATCTGAGGAATCGACCCTTTTGACCTTCAAAGCCTCCATTAAAGATTCAACAAACTCTCTCTCCAACTGGGTTTCTTCTTCTCAGACCCATTTCTGTAATTGGACTGGAATTTCTTGTGCCAACTCTTCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTTTGAACCTTTCTGGGGAAATTTCATCTTCTCTTTGTGAACTCCCTCGTTTGGCCCATCTTAATCTTGCGGATAATCGGTTTAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGTAATAATCTTATCTGGGGAACGATCCCAGATCAGATTTCTCTGTTTGGTTCTTTGCGAGTGCTTGATTTAGGGAAGAATCACATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAATAATCTACAAATTCTCAATCTCAGAAGCAACTTGATTTCTGGTACAGTTCCTTCTGTTGTCTTTCATAATCTGACTGAACTTCTTGTTGTTGATTTATCTGAAAATTCTTATTTGTTGAGTGATATTCCTAGTGAGATTGGGAAGCTTGATAAACTTGAGGAGTTATTGCTTCACAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGTTTGAGTGTTTTGGATCTTTCACAGAACAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTTTGAAGAATTTGGTGTCTTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTGTTCATACCAATTTTTTCACTGGGAGTTTGCCTAATTCCTTGAACCAGTGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAACGGGTTTTCTGGGGATTTTCCTAAAGCTCTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATCGTTTCTCTGGTGAAATTCCAGAGTCTATATCTATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCAAGTAAAATACCTCGGGGTCTCGGGTCTATTAGAAACTTATATCGATTCTCTGTGTCACTCAATCGCTTTTATGGCGAATTGCCACCAAACTTCTGTGATTCACCATTAATGAGTATAATTAATTTGTCACACAATTCTCTTTCCGGTCGAATTCCCGAGCCGAAAAACTGCAAGAAACTGGTCTCTTTGTCCTTAGCAGGCAATAGTCTTACTGGAGGAATTCCTACTTCCCTTGCAGATCTACCTGTGTTAACTTATCTTGATCTTTCTGATAACAATCTCACTGGTTCGATCCCTCAAGGACTTGAAAACCTAAAGCTTGCACTCTTTAATGTTTCCTTCAATCAACTATCGGGCGCTGTTCCCTTCTCTTTGATTTCGGGGCTACCAGCTTCATTCCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAGGGCCATCCAACAAACCATATGTATAGACTTAACAAAATGACATGTGCCCTCATCTCTCTAGCTTGTGTTTTAGGAGTTCTGAGTTTAGCTGCTGGGTTCATTCTGTATTATCGATCCTACAAACCGAAATCCCGAATCGATAACTGGCATTCAGTCTACTTCTATCCTCTTAGAATCAGTGAGCATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGAGGAGCTTTTGGCCAAGTGTTCATTTTAAGCTTACCAAGCCGTGAACTGATCGCCGTAAAGAAACTCGTTAATTTTGGGAGTCGTTCATGGAAGTCGTTGAAAGCTGAGGTCAAGACATTGGCCAAGATCAGGCACAAAAACATCATCAAAATACTTGGGTTTTGCCATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACACAAAGGGAGCTTGGCTGACTTGATATGCAGAAATGACTCTTGTCTCAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAATGACTATGTCCCACATTTACTTCATCGAAATGTCAAATCGTCCAACATTCTATTGGACGCCGACTTTGTCCCAAAGCTCATGGATTTTGCTCTTCACCATATCATTGGAGAGTCGGCATTTCAGTCGACAGTAGCTTCGGAATCTTCTCATTCCTGCTACATTGCACCAGAATATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAGTTGGTGACTGGTAGACAAGCCGAGCGCTTGGAATCAACGGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCTTGGACTCGAGCATCTCGGAACATTGTCAACGACAAATGCTGGAAGCTCTAGACATTGCCCTCCAGTGCACTTCTATAATGCCTGAAAAACGACCGTCGATGCTCGAAGTCGTCAAGGCCCTTCAATTGGTTGGATCAACAACAAACCTTCACGATGCAGCCTTCTCGGTTGCAGAGGATAGTTCGGTTTCAAGCAAAAGACCTCCTCTTGCTCCATGA 2685 42.46 MASPFKPPLLLFLAFAFFILGSSSSEESTLLTFKASIKDSTNSLSNWVSSSQTHFCNWTGISCANSSPSLLSVSAIDLQGLNLSGEISSSLCELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISLFGSLRVLDLGKNHIEGKIPEGIGALNNLQILNLRSNLISGTVPSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLDKLEELLLHSSGFYGEIPSSLLGLRSLSVLDLSQNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSVHTNFFTGSLPNSLNQCLNLERFQVQNNGFSGDFPKALWSLPKIKLIRAENNRFSGEIPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRNLYRFSVSLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGGIPTSLADLPVLTYLDLSDNNLTGSIPQGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPTNHMYRLNKMTCALISLACVLGVLSLAAGFILYYRSYKPKSRIDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHNDYVPHLLHRNVKSSNILLDADFVPKLMDFALHHIIGESAFQSTVASESSHSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERLESTDSLDVVQWVRRKVNIANGASQVLDSSISEHCQRQMLEALDIALQCTSIMPEKRPSMLEVVKALQLVGSTTNLHDAAFSVAEDSSVSSKRPPLAP 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2896121 2899709 - CcPI632755_04g001280.1 Cco04g0128 175353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0128 894 ProSiteProfiles Protein kinase domain profile. 595 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0128 894 SUPERFAMILY Protein kinase-like (PK-like) 604 870 IPR011009 -
Cco04g0128 894 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 264 527 - -
Cco04g0128 894 SUPERFAMILY L domain-like 205 531 - -
Cco04g0128 894 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cco04g0128 894 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515(InterPro)
Cco04g0128 894 Gene3D Ribonuclease Inhibitor 188 264 IPR032675 -
Cco04g0128 894 Gene3D Ribonuclease Inhibitor 265 527 IPR032675 -
Cco04g0128 894 Pfam Leucine rich repeat 434 492 IPR001611 GO:0005515(InterPro)
Cco04g0128 894 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515(InterPro)
Cco04g0128 894 FunFam - 589 670 - -
Cco04g0128 894 Gene3D Transferase(Phosphotransferase) domain 1 672 883 - -
Cco04g0128 894 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Cco04g0128 894 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 671 871 - -
Cco04g0128 894 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Cco04g0128 894 SUPERFAMILY L domain-like 24 295 - -
Cco04g0128 894 SMART LRR_typ_2 191 216 IPR003591 -
Cco04g0128 894 SMART LRR_typ_2 240 264 IPR003591 -
Cco04g0128 894 SMART LRR_typ_2 94 118 IPR003591 -
Cco04g0128 894 SMART LRR_typ_2 142 165 IPR003591 -
Cco04g0128 894 SMART LRR_typ_2 456 480 IPR003591 -
Cco04g0128 894 SMART LRR_typ_2 166 190 IPR003591 -
Cco04g0128 894 SMART LRR_typ_2 265 289 IPR003591 -
Cco04g0128 894 Gene3D Ribonuclease Inhibitor 23 187 IPR032675 -
Cco04g0128 894 FunFam Leucine-rich repeat family protein 25 184 - -
Cco04g0128 894 PANTHER OS04G0122200 PROTEIN 39 140 IPR051809 -
Cco04g0128 894 Pfam Protein tyrosine and serine/threonine kinase 604 863 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0128 894 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0128 Cco-Chr4:2896121 Cco04g1560 Cco-Chr4:30965638 3.70E-58 dispersed
Cco04g0126 Cco-Chr4:2882815 Cco04g0128 Cco-Chr4:2896121 4.70E-11 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86706 PF07714 PK_Tyr_Ser-Thr 4.70E-38 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0128 - - - 0.0