Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0150 ATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTGCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTACCCCTACCCGAACCCGAACCCGCATCCGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCACCCGAGCAGCGGCAGGAGCAAGAAGAAGAAGACGACGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGGAAAGGCCCAGAGTCCCTCCGGGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGCACACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACGCTGCAAACGCATTACAAGCGCAAGCACGGCCTGAAACCCTTCATGTGTCGAAAGTGTGGTAAGGCGTTTGCTGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGCCGGGATCGATGGGTTCGGAGACGAGGAAGATGAGCCCGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA 993 51.96 MGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSYPYPNPNPHPPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCTPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGAGIDGFGDEEDEPASEVEQDNDE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3517654 3520514 - CcPI632755_04g001500.1 Cco04g0150 175375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0150 330 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Cco04g0150 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Cco04g0150 330 MobiDBLite consensus disorder prediction 312 330 - -
Cco04g0150 330 FunFam zinc finger protein WIP2-like 166 189 - -
Cco04g0150 330 Gene3D Classic Zinc Finger 166 189 - -
Cco04g0150 330 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 250 274 - -
Cco04g0150 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 271 IPR013087 -
Cco04g0150 330 SUPERFAMILY beta-beta-alpha zinc fingers 163 189 IPR036236 -
Cco04g0150 330 MobiDBLite consensus disorder prediction 308 330 - -
Cco04g0150 330 SUPERFAMILY beta-beta-alpha zinc fingers 236 271 IPR036236 -
Cco04g0150 330 FunFam Zinc finger protein WIP2 220 302 - -
Cco04g0150 330 MobiDBLite consensus disorder prediction 71 91 - -
Cco04g0150 330 PANTHER ZINC FINGER PROTEIN WIP2 31 328 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cco04g0150 330 MobiDBLite consensus disorder prediction 127 141 - -
Cco04g0150 330 SMART c2h2final6 167 189 IPR013087 -
Cco04g0150 330 SMART c2h2final6 251 271 IPR013087 -
Cco04g0150 330 Gene3D Classic Zinc Finger 229 304 - -
Cco04g0150 330 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0150 Cco-Chr4:3517654 Cco10g1704 Cco-Chr10:30590448 3.80E-101 dispersed
Cco04g0150 Cco-Chr4:3517654 Cco02g2486 Cco-Chr2:37194600 1.90E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58992 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0150 - - - 0.0