Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0173 ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCCTCAAAAGGCCCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCATAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCATGAACTTGGAAACATTAGGTGCTTGGCACTGGAAAAGGTAGCTGAGTCACTGGAAATCCCCTGCAAATACCAGAATTTGGGCTGTCAAGATATTTTTCCCTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATATCGTCCTTACAACTGCCCATATGCTGGATCAGAGTGTTCGGTCACGGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGCAAACTGATATGGCAAGGAATCCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCAGGAGGAGAAAGGCAAGAGTTGAAGCTGAGAATTACAGGTCGAATATGGAAAGAAGAATGA 924 45.02 MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKGPLGLSGKIGVYSTNGVQELLECPVCINLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCKYQNLGCQDIFPYYSKLKHEQHCRYRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4180872 4184017 + CcPI632755_04g001730.1 Cco04g0173 175398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0173 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 302 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cco04g0173 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515(InterPro)
Cco04g0173 307 Pfam Sina, zinc finger 108 183 - -
Cco04g0173 307 SUPERFAMILY TRAF domain-like 112 304 - -
Cco04g0173 307 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Cco04g0173 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Cco04g0173 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Cco04g0173 307 SUPERFAMILY RING/U-box 53 100 - -
Cco04g0173 307 CDD Sina 173 301 - -
Cco04g0173 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Cco04g0173 307 MobiDBLite consensus disorder prediction 1 37 - -
Cco04g0173 307 MobiDBLite consensus disorder prediction 21 37 - -
Cco04g0173 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 166 IPR013083 -
Cco04g0173 307 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco04g0173 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 113 IPR013083 -
Cco04g0173 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Cco04g0173 307 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Cco04g0173 307 CDD RING-HC_SIAHs 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2532 Cco-Chr2:37658051 Cco04g0173 Cco-Chr4:4180872 7.60E-134 dispersed
Cco04g0173 Cco-Chr4:4180872 Cco05g1060 Cco-Chr5:9461056 1.10E-131 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0173 K04506 - rcu:8260973 581.252