Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0188 | ATGGGGGACGGCAATAACACCAGTAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATAAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGTGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAACTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTCGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCAATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGTCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCGCCCCAGCAGAAACAACAAAGACGGTCTGAAATTACTTTGTTGGCTTTGCTCAAAATTTTTCCATACGCATCTACAAAGCTGAAGTGGCGTTTGCTTGTTGATTTATCTGCAACCCGAGTAACTAGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCATATGACTTTGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCAGATTAATCGTATTTTGGGCCGGAGCAATGAACCTATTTGAAGTGACTCATTTCATACCGGAGAAGCCCATAGAAGGGTGGATTGTTAGTGTGGATGATTTGGAAGATATAATTGGGGGACATGTATGGTTAGGTTCCATTTATATACTTGGTGAAATTTGGCATATCTTAACTAAACCATTTGCCTGGGCTTGCTGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTATTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTATTGGTTTAGGTAAATATCTAATGCGTTCTCCAACTGGAGAAGTCATTTTTGGGGCAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACCAAGGGGTCCTAGTGGTTTGGACTTGAGTACACTGAAGAAATACATCCAACCTTGGCAAGAACGACGTTCGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCACAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGA | 2478 | 44.67 | MGDGNNTSRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRSEITLLALLKIFPYASTKLKWRLLVDLSATRVTSLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHARLIVFWAGAMNLFEVTHFIPEKPIEGWIVSVDDLEDIIGGHVWLGSIYILGEIWHILTKPFAWACCALVWSGEAYLSYSLGALSIFGFIACSFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPIGLGKYLMRSPTGEVIFGAETMRFWDLRAPWLEPPRGPSGLDLSTLKKYIQPWQERRSVIYGMQEGLVQLPQDLKKELIVILNLFCS | 825 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4419272 | 4435837 | + | CcPI632755_04g001880.1 | Cco04g0188 | 175413 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0188 | 825 | Pfam | Protein kinase domain | 40 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0188 | 825 | FunFam | Photosystem II CP43 reaction center protein | 708 | 803 | - | - | |
Cco04g0188 | 825 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 168 | 180 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g0188 | 825 | SUPERFAMILY | Bacterial photosystem II reaction centre, L and M subunits | 476 | 565 | IPR036854 | GO:0009772(InterPro)|GO:0019684(InterPro)|GO:0045156(InterPro) | |
Cco04g0188 | 825 | ProSiteProfiles | Protein kinase domain profile. | 40 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0188 | 825 | Gene3D | Transferase(Phosphotransferase) domain 1 | 123 | 362 | - | - | |
Cco04g0188 | 825 | PANTHER | CELL DIVISION PROTEIN KINASE | 39 | 351 | IPR050108 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER) | |
Cco04g0188 | 825 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 352 | IPR011009 | - | |
Cco04g0188 | 825 | CDD | STKc_CDK8_like | 39 | 351 | - | - | |
Cco04g0188 | 825 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 122 | - | - | |
Cco04g0188 | 825 | FunFam | Cyclin-dependent kinase e-1 | 28 | 124 | - | - | |
Cco04g0188 | 825 | ProSitePatterns | Protein kinases ATP-binding region signature. | 46 | 74 | IPR017441 | GO:0005524(InterPro) | |
Cco04g0188 | 825 | SUPERFAMILY | Photosystem II antenna protein-like | 575 | 804 | IPR036001 | GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro) | |
Cco04g0188 | 825 | FunFam | Putative cyclin-dependent kinase E-1 | 125 | 364 | - | - | |
Cco04g0188 | 825 | Gene3D | photosystem ii from thermosynechococcus elongatus | 708 | 802 | IPR044900 | - | |
Cco04g0188 | 825 | MobiDBLite | consensus disorder prediction | 452 | 482 | - | - | |
Cco04g0188 | 825 | Pfam | Photosystem II protein | 637 | 767 | IPR000932 | GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro) | |
Cco04g0188 | 825 | Pfam | Photosystem II protein | 574 | 624 | IPR000932 | GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro) | |
Cco04g0188 | 825 | SMART | serkin_6 | 40 | 351 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0188 | Cco-Chr4:4419272 | Cco05g1379 | Cco-Chr5:14967937 | 5.20E-91 | dispersed | |
Cco04g0188 | Cco-Chr4:4419272 | Cco08g1903 | Cco-Chr8:30030380 | 3.30E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86710 | PF00069 | Pkinase | 7.00E-68 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0188 | K02208 | - | csv:101203984 | 944.11 |