Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0188 ATGGGGGACGGCAATAACACCAGTAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATAAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGTGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAACTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTCGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCAATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGTCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCGCCCCAGCAGAAACAACAAAGACGGTCTGAAATTACTTTGTTGGCTTTGCTCAAAATTTTTCCATACGCATCTACAAAGCTGAAGTGGCGTTTGCTTGTTGATTTATCTGCAACCCGAGTAACTAGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCATATGACTTTGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCAGATTAATCGTATTTTGGGCCGGAGCAATGAACCTATTTGAAGTGACTCATTTCATACCGGAGAAGCCCATAGAAGGGTGGATTGTTAGTGTGGATGATTTGGAAGATATAATTGGGGGACATGTATGGTTAGGTTCCATTTATATACTTGGTGAAATTTGGCATATCTTAACTAAACCATTTGCCTGGGCTTGCTGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTATTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTATTGGTTTAGGTAAATATCTAATGCGTTCTCCAACTGGAGAAGTCATTTTTGGGGCAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACCAAGGGGTCCTAGTGGTTTGGACTTGAGTACACTGAAGAAATACATCCAACCTTGGCAAGAACGACGTTCGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCACAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGA 2478 44.67 MGDGNNTSRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRSEITLLALLKIFPYASTKLKWRLLVDLSATRVTSLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHARLIVFWAGAMNLFEVTHFIPEKPIEGWIVSVDDLEDIIGGHVWLGSIYILGEIWHILTKPFAWACCALVWSGEAYLSYSLGALSIFGFIACSFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPIGLGKYLMRSPTGEVIFGAETMRFWDLRAPWLEPPRGPSGLDLSTLKKYIQPWQERRSVIYGMQEGLVQLPQDLKKELIVILNLFCS 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4419272 4435837 + CcPI632755_04g001880.1 Cco04g0188 175413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0188 825 Pfam Protein kinase domain 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0188 825 FunFam Photosystem II CP43 reaction center protein 708 803 - -
Cco04g0188 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0188 825 SUPERFAMILY Bacterial photosystem II reaction centre, L and M subunits 476 565 IPR036854 GO:0009772(InterPro)|GO:0019684(InterPro)|GO:0045156(InterPro)
Cco04g0188 825 ProSiteProfiles Protein kinase domain profile. 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0188 825 Gene3D Transferase(Phosphotransferase) domain 1 123 362 - -
Cco04g0188 825 PANTHER CELL DIVISION PROTEIN KINASE 39 351 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cco04g0188 825 SUPERFAMILY Protein kinase-like (PK-like) 35 352 IPR011009 -
Cco04g0188 825 CDD STKc_CDK8_like 39 351 - -
Cco04g0188 825 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Cco04g0188 825 FunFam Cyclin-dependent kinase e-1 28 124 - -
Cco04g0188 825 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524(InterPro)
Cco04g0188 825 SUPERFAMILY Photosystem II antenna protein-like 575 804 IPR036001 GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro)
Cco04g0188 825 FunFam Putative cyclin-dependent kinase E-1 125 364 - -
Cco04g0188 825 Gene3D photosystem ii from thermosynechococcus elongatus 708 802 IPR044900 -
Cco04g0188 825 MobiDBLite consensus disorder prediction 452 482 - -
Cco04g0188 825 Pfam Photosystem II protein 637 767 IPR000932 GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro)
Cco04g0188 825 Pfam Photosystem II protein 574 624 IPR000932 GO:0009521(InterPro)|GO:0009767(InterPro)|GO:0016020(InterPro)|GO:0016168(InterPro)|GO:0019684(InterPro)
Cco04g0188 825 SMART serkin_6 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0188 Cco-Chr4:4419272 Cco05g1379 Cco-Chr5:14967937 5.20E-91 dispersed
Cco04g0188 Cco-Chr4:4419272 Cco08g1903 Cco-Chr8:30030380 3.30E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86710 PF00069 Pkinase 7.00E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0188 K02208 - csv:101203984 944.11