Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g0191 | ATGTTGAATTATATTCATCGTCGGAATCTGATCGGAGATCGCGATTTGATGCAGCCATTATTAGTGTTGTCAAAGTCTGATAATAAGTACGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAGACGATTCTCACGGAGGAGGAATGAATGTAAATGCACACAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCCGGTAATCCGACGGCGACAGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGTGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAACAACAACAACAGCAACAACAACTCTGGTTTTATGGCGACGAAGGGCGGTGGCAGCGGCGGAAATAATTATCGTTGTGACAGCATGGAGACGCCAGGAGTGGTGATAAAGCCGCACACGGGTGGAGATGTGCGGTGGGATGCCATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAACTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTGGCGAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACTGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAACGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCGGTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAGTACCGGCGGCTACGGCGTCGACCATGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGCAGCGATCCCAATTATGTGGATTTTGAGTACTTCTAG | 1782 | 49.78 | MLNYIHRRNLIGDRDLMQPLLVLSKSDNKYDGSEMFNNTSKGEDDSHGGGMNVNAHNFVKNPPDSLRRIDQIAKNGVNSGNPTATVNAEIHSSQPGGSIVPIPTSTSATNLKNLNNNNNSNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKNCTGAAEDKKPVEVPAATASTMATPAAAENSSPSTGSDPNYVDFEYF | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4495443 | 4497547 | - | CcPI632755_04g001910.1 | Cco04g0191 | 175416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g0191 | 593 | Gene3D | Transferase(Phosphotransferase) domain 1 | 262 | 331 | - | - | |
Cco04g0191 | 593 | CDD | STKc_phototropin_like | 176 | 538 | - | - | |
Cco04g0191 | 593 | FunFam | Serine/threonine-protein kinase AGC1-7 | 410 | 535 | - | - | |
Cco04g0191 | 593 | Gene3D | Phosphorylase Kinase; domain 1 | 176 | 261 | - | - | |
Cco04g0191 | 593 | Gene3D | Transferase(Phosphotransferase) domain 1 | 392 | 535 | - | - | |
Cco04g0191 | 593 | MobiDBLite | consensus disorder prediction | 550 | 593 | - | - | |
Cco04g0191 | 593 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 299 | 311 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g0191 | 593 | Pfam | Protein kinase domain | 179 | 331 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0191 | 593 | Pfam | Protein kinase domain | 366 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0191 | 593 | ProSiteProfiles | Protein kinase domain profile. | 178 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g0191 | 593 | SUPERFAMILY | Protein kinase-like (PK-like) | 175 | 546 | IPR011009 | - | |
Cco04g0191 | 593 | PANTHER | FLIPPASE KINASE 1-RELATED | 129 | 545 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco04g0191 | 593 | FunFam | Serine/threonine-protein kinase AGC1-5 | 176 | 261 | - | - | |
Cco04g0191 | 593 | MobiDBLite | consensus disorder prediction | 569 | 585 | - | - | |
Cco04g0191 | 593 | FunFam | serine/threonine-protein kinase D6PK-like | 262 | 329 | - | - | |
Cco04g0191 | 593 | MobiDBLite | consensus disorder prediction | 102 | 131 | - | - | |
Cco04g0191 | 593 | SMART | serkin_6 | 178 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1229 | Cco-Chr1:18768052 | Cco04g0191 | Cco-Chr4:4495443 | 3.00E-152 | dispersed | |
Cco04g0191 | Cco-Chr4:4495443 | Cco10g1370 | Cco-Chr10:26715631 | 1.60E-147 | dispersed | |
Cco04g0191 | Cco-Chr4:4495443 | Cco04g1902 | Cco-Chr4:33532347 | 5.50E-151 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86711 | PF00069 | Pkinase | 1.00E-21 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g0191 | - | - | - | 0.0 |