Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g0191 ATGTTGAATTATATTCATCGTCGGAATCTGATCGGAGATCGCGATTTGATGCAGCCATTATTAGTGTTGTCAAAGTCTGATAATAAGTACGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAGACGATTCTCACGGAGGAGGAATGAATGTAAATGCACACAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCCGGTAATCCGACGGCGACAGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGTGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAACAACAACAACAGCAACAACAACTCTGGTTTTATGGCGACGAAGGGCGGTGGCAGCGGCGGAAATAATTATCGTTGTGACAGCATGGAGACGCCAGGAGTGGTGATAAAGCCGCACACGGGTGGAGATGTGCGGTGGGATGCCATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAACTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTGGCGAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACTGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAACGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCGGTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAGTACCGGCGGCTACGGCGTCGACCATGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGCAGCGATCCCAATTATGTGGATTTTGAGTACTTCTAG 1782 49.78 MLNYIHRRNLIGDRDLMQPLLVLSKSDNKYDGSEMFNNTSKGEDDSHGGGMNVNAHNFVKNPPDSLRRIDQIAKNGVNSGNPTATVNAEIHSSQPGGSIVPIPTSTSATNLKNLNNNNNSNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKNCTGAAEDKKPVEVPAATASTMATPAAAENSSPSTGSDPNYVDFEYF 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4495443 4497547 - CcPI632755_04g001910.1 Cco04g0191 175416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g0191 593 Gene3D Transferase(Phosphotransferase) domain 1 262 331 - -
Cco04g0191 593 CDD STKc_phototropin_like 176 538 - -
Cco04g0191 593 FunFam Serine/threonine-protein kinase AGC1-7 410 535 - -
Cco04g0191 593 Gene3D Phosphorylase Kinase; domain 1 176 261 - -
Cco04g0191 593 Gene3D Transferase(Phosphotransferase) domain 1 392 535 - -
Cco04g0191 593 MobiDBLite consensus disorder prediction 550 593 - -
Cco04g0191 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g0191 593 Pfam Protein kinase domain 179 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0191 593 Pfam Protein kinase domain 366 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0191 593 ProSiteProfiles Protein kinase domain profile. 178 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g0191 593 SUPERFAMILY Protein kinase-like (PK-like) 175 546 IPR011009 -
Cco04g0191 593 PANTHER FLIPPASE KINASE 1-RELATED 129 545 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g0191 593 FunFam Serine/threonine-protein kinase AGC1-5 176 261 - -
Cco04g0191 593 MobiDBLite consensus disorder prediction 569 585 - -
Cco04g0191 593 FunFam serine/threonine-protein kinase D6PK-like 262 329 - -
Cco04g0191 593 MobiDBLite consensus disorder prediction 102 131 - -
Cco04g0191 593 SMART serkin_6 178 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1229 Cco-Chr1:18768052 Cco04g0191 Cco-Chr4:4495443 3.00E-152 dispersed
Cco04g0191 Cco-Chr4:4495443 Cco10g1370 Cco-Chr10:26715631 1.60E-147 dispersed
Cco04g0191 Cco-Chr4:4495443 Cco04g1902 Cco-Chr4:33532347 5.50E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86711 PF00069 Pkinase 1.00E-21 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g0191 - - - 0.0